CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41311	Canola	cytosol	98.11	98.11
CDY41590	Canola	cytosol	95.09	94.74
CDY44726	Canola	cytosol	95.47	94.4
AT3G09740.1	Thale cress	cytosol	94.34	93.98
CDY40392	Canola	cytosol	31.7	81.55
VIT_08s0040g02130.t01	Wine grape	cytosol	77.36	77.36
Solyc10g084210.1.1	Tomato	nucleus	76.6	76.6
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	74.72	74.16
GSMUA_Achr9P00150_001	Banana	cytosol	73.58	73.31
GSMUA_Achr5P09270_001	Banana	plasma membrane	71.32	72.41
CDY39898	Canola	cytosol	33.96	69.23
Os05t0553700-01	Rice	plasma membrane	68.3	67.54
EES18638	Sorghum	cytosol	68.3	66.79
Zm00001d038931_P002	Maize	plasma membrane	67.92	66.67
TraesCS1A01G379800.1	Wheat	cytosol	67.17	65.93
TraesCS1B01G401800.1	Wheat	cytosol	67.17	65.93
HORVU1Hr1G084160.1	Barley	cytosol	66.79	65.56
TraesCS1D01G387200.1	Wheat	cytosol	66.79	65.56
CDY50077	Canola	cytosol	46.42	63.73
CDX71736	Canola	cytosol	62.64	62.17
CDY48918	Canola	cytosol, plastid	61.13	60.0
CDX86009	Canola	plastid	35.47	58.75
CDX86012	Canola	cytosol	40.75	57.45
CDY53837	Canola	cytosol	61.51	56.21
CDX86011	Canola	cytosol	16.6	55.7
TraesCS1D01G190400.1	Wheat	cytosol	44.91	50.64

Protein Annotations

EnsemblPlants:CDY22202	EnsemblPlantsGene:GSBRNA2T00018621001	Gene3D:1.20.5.110	GO:A0A078GAW4	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil	PANTHER:PTHR19957	PANTHER:PTHR19957:SF129
PFAM:PF05739	PFscan:PS50192	ProteinID:CDY22202	ProteinID:CDY22202.1	SMART:SM00397	SUPFAM:SSF58038
TMHMM:TMhelix	UniParc:UPI0004EE07BD	UniProt:A0A078GAW4	MapMan:13.4.2.3.3	MapMan:22.7.4.3	:

Description

BnaC01g38990DBnaC01g38990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAW4]

Coordinates

chrLK032128:+:523694..525894

Molecular Weight (calculated)

29749.2 Da

IEP (calculated)

4.831

GRAVY (calculated)

-0.507

Length

265 amino acids

Sequence
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANV SGDDAFARLY GAFDTQIETA LEKAELVTKE KNRASAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKA TSAWAPSTAS RPDIKFDSDG RFDDDYFQES HESSQFRQEF EMRKIKQASD EQGLDMISEG LDALKNMASD
201: MNEELDRQVP LMDEIDSKVD RATSDLKNTN VRLKDTVNQL RSSRNFCIDI VLLCIVLGIA AYLYK

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.