Factsheet for GSMUA_Achr5P09270_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	89.66	87.64
GSMUA_Achr9P00150_001	Banana	cytosol	86.97	85.34
VIT_08s0040g02130.t01	Wine grape	cytosol	80.08	78.87
Solyc10g084210.1.1	Tomato	nucleus	78.16	76.98
PGSC0003DMT400027162	Potato	cytosol	77.78	76.6
KRH19848	Soybean	cytosol	77.01	75.85
KRH32439	Soybean	cytosol, plastid	76.63	75.47
KRG95962	Soybean	mitochondrion	74.71	73.58
Bra034085.1-P	Field mustard	cytosol	73.18	72.9
AT3G09740.1	Thale cress	cytosol	73.95	72.56
KRH67670	Soybean	endoplasmic reticulum	73.18	72.08
Zm00001d038931_P002	Maize	plasma membrane	74.33	71.85
CDY41311	Canola	cytosol	72.8	71.7
CDY22202	Canola	cytosol	72.41	71.32
CDY41590	Canola	cytosol	72.41	71.05
Os05t0553700-01	Rice	plasma membrane	72.8	70.9
EES18638	Sorghum	cytosol	73.56	70.85
HORVU1Hr1G084160.1	Barley	cytosol	72.41	70.0
CDY44726	Canola	cytosol	71.65	69.78
Bra029785.1-P	Field mustard	cytosol	71.65	69.78
TraesCS1A01G379800.1	Wheat	cytosol	72.03	69.63
TraesCS1B01G401800.1	Wheat	cytosol	71.65	69.26
TraesCS1D01G387200.1	Wheat	cytosol	71.65	69.26
CDY40392	Canola	cytosol	24.52	62.14
Bra014333.1-P	Field mustard	cytosol	24.52	62.14
TraesCS1D01G190400.1	Wheat	cytosol	46.74	51.91
PGSC0003DMT400093449	Potato	cytosol	15.71	48.81
CDY39898	Canola	cytosol	24.14	48.46
CDY50077	Canola	cytosol	34.1	46.11
Bra027876.1-P	Field mustard	cytosol	26.05	44.74
CDX86009	Canola	plastid	24.14	39.38

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.3	MapMan:22.7.4.3	ncoils:Coil	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0061025	EnsemblPlantsGene:GSMUA_Achr5G09270_001	EnsemblPlants:GSMUA_Achr5P09270_001	EnsemblPlants:GSMUA_Achr5T09270_001	InterPro:IPR000727	UniProt:M0SX06
PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF208	SMART:SM00397
SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0002964882	:

Description

Syntaxin-71 [Source:GMGC_GENE;Acc:GSMUA_Achr5G09270_001]

Coordinates

chr5:-:6722904..6727138

Molecular Weight (calculated)

29560.1 Da

IEP (calculated)

5.302

GRAVY (calculated)

-0.540

Length

261 amino acids

Sequence
(BLAST)

001: MSVIDILTRV DAICKKYERY DVEKLNADNV HGNDAFARLY ASVESDIESA LQKAEMAAGE KNRAAAVALN AEVRRTKARL LEEIPKLQRL AVKNVKGLSK
101: EELATRSDLV LALPGRIQSI PDGSTNGSKQ TESWTASRTE IRFDSTSDGR FESEYFQQTE ESSQFRQEYE MRKMKQDQGL NIISEGLETL KNMAHDMNEE
201: LDRQVPLMDE IDTKVDKATS DLKNTNVRLK QTVNQLRSSR NFCIDIILLC VILGIAAYLY K

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.