CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 2
golgi 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95962	Soybean	mitochondrion	96.23	96.23
KRH32439	Soybean	cytosol, plastid	88.3	88.3
KRH19848	Soybean	cytosol	88.3	88.3
VIT_08s0040g02130.t01	Wine grape	cytosol	82.64	82.64
Solyc10g084210.1.1	Tomato	nucleus	80.75	80.75
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	79.62	79.03
GSMUA_Achr9P00150_001	Banana	cytosol	75.47	75.19
AT3G09740.1	Thale cress	cytosol	73.96	73.68
GSMUA_Achr5P09270_001	Banana	plasma membrane	72.08	73.18
Os05t0553700-01	Rice	plasma membrane	71.7	70.9
Zm00001d038931_P002	Maize	plasma membrane	72.08	70.74
EES18638	Sorghum	cytosol	71.32	69.74
HORVU1Hr1G084160.1	Barley	cytosol	69.81	68.52
TraesCS1B01G401800.1	Wheat	cytosol	69.81	68.52
TraesCS1A01G379800.1	Wheat	cytosol	69.81	68.52
TraesCS1D01G387200.1	Wheat	cytosol	69.43	68.15
KRH22921	Soybean	cytosol	63.02	63.02
KRH26397	Soybean	cytosol	63.02	63.02
PGSC0003DMT400093449	Potato	cytosol	17.74	55.95
TraesCS1D01G190400.1	Wheat	cytosol	43.77	49.36
CDY39898	Canola	cytosol	23.4	47.69
CDY50077	Canola	cytosol	34.34	47.15
Bra027876.1-P	Field mustard	cytosol	25.28	44.08
CDX86009	Canola	plastid	25.66	42.5

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100780958	MapMan:13.4.2.3.3	MapMan:22.7.4.3	EMBL:ACUP02002069	EMBL:BT098344
UniProt:C6TKX1	EnsemblPlantsGene:GLYMA_03G179500	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0031201	GO:GO:0048278	InterPro:IPR000727	EnsemblPlants:KRH67670
ProteinID:KRH67670	ProteinID:KRH67670.1	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF129	SMART:SM00397	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI0001B16E42	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:39171711..39176932

Molecular Weight (calculated)

29739.4 Da

IEP (calculated)

5.562

GRAVY (calculated)

-0.511

Length

265 amino acids

Sequence
(BLAST)

001: MSVIDILTRV DSICKKYDKY DVQSQRDSNL SSDDAFAKLY ASVDADIEAL LQKADTASKE KSKASTVAIN AEIRRTKARL LEEVPKLQRL AMKKVKGLSS
101: QEFAARNDLA LALPDRIQAI PDGTPAASKQ SGSWAASASR PGIKFDSDGK FDDEYFQQTE ESSGFRKEYE MRKMKQDQGL DMIAEGLDTL KNMAHDMNEE
201: LDRQVPLMDE IDTKVDRASS DLKNTNVRLR DTVNQLRSSR NFCIDIVLLI IILGIAAYLY NVLKK

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.