CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67670	Soybean	endoplasmic reticulum	96.23	96.23
KRH19848	Soybean	cytosol	90.57	90.57
KRH32439	Soybean	cytosol, plastid	90.19	90.19
VIT_08s0040g02130.t01	Wine grape	cytosol	83.4	83.4
Solyc10g084210.1.1	Tomato	nucleus	81.51	81.51
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	80.38	79.78
GSMUA_Achr9P00150_001	Banana	cytosol	76.98	76.69
AT3G09740.1	Thale cress	cytosol	75.47	75.19
GSMUA_Achr5P09270_001	Banana	plasma membrane	73.58	74.71
Os05t0553700-01	Rice	plasma membrane	72.45	71.64
Zm00001d038931_P002	Maize	plasma membrane	72.83	71.48
EES18638	Sorghum	cytosol	72.08	70.48
HORVU1Hr1G084160.1	Barley	cytosol	71.32	70.0
TraesCS1A01G379800.1	Wheat	cytosol	71.32	70.0
TraesCS1B01G401800.1	Wheat	cytosol	71.32	70.0
TraesCS1D01G387200.1	Wheat	cytosol	70.94	69.63
KRH26397	Soybean	cytosol	63.77	63.77
KRH22921	Soybean	cytosol	63.77	63.77
PGSC0003DMT400093449	Potato	cytosol	18.11	57.14
TraesCS1D01G190400.1	Wheat	cytosol	45.28	51.06
CDY39898	Canola	cytosol	23.77	48.46
CDY50077	Canola	cytosol	35.09	48.19
Bra027876.1-P	Field mustard	cytosol	25.66	44.74
CDX86009	Canola	plastid	26.79	44.38

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100804155	MapMan:13.4.2.3.3	MapMan:22.7.4.3	EMBL:ACUP02012141	ncoils:Coil
EnsemblPlantsGene:GLYMA_19G180200	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0031201	GO:GO:0048278	UniProt:I1NA77	InterPro:IPR000727	EnsemblPlants:KRG95962
ProteinID:KRG95962	ProteinID:KRG95962.1	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF129	SMART:SM00397	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI0001BA93C2	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:43897166..43901748

Molecular Weight (calculated)

29900.6 Da

IEP (calculated)

5.308

GRAVY (calculated)

-0.530

Length

265 amino acids

Sequence
(BLAST)

001: MSVIDILTRV DSICKKYDKY DVEKQRDSNL SADDAFAKLY ASVDADIEAL LQKAETADKE KSKASTVAIN AEIRRTKARL LEEVPKLQRL AMKKVKGLSS
101: QEFAARNDLA LALPDRIQAI PDGAPAAPKQ TGSWAASASR PGIKFDSDGK FDDEYFQQTE ESSRFRQEYE MRKMKQDQGL DMIAEGLDTL KNMAHDMNEE
201: LDRQVPLMDE IDTKVDRASS DLKNTNVRLR DTVNQLRSSR NFCIDIVLLI IILGIAAYLY NVLKK

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.