CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038931_P002	Maize	plasma membrane	98.52	98.89
Os05t0553700-01	Rice	plasma membrane	89.3	90.3
HORVU1Hr1G084160.1	Barley	cytosol	89.67	90.0
TraesCS1B01G401800.1	Wheat	cytosol	89.3	89.63
TraesCS1A01G379800.1	Wheat	cytosol	88.93	89.26
TraesCS1D01G387200.1	Wheat	cytosol	88.56	88.89
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	76.01	77.15
VIT_08s0040g02130.t01	Wine grape	cytosol	74.91	76.6
Solyc10g084210.1.1	Tomato	nucleus	74.17	75.85
PGSC0003DMT400027162	Potato	cytosol	74.17	75.85
GSMUA_Achr9P00150_001	Banana	cytosol	73.43	74.81
KRH32439	Soybean	cytosol, plastid	73.06	74.72
KRH19848	Soybean	cytosol	72.32	73.96
GSMUA_Achr5P09270_001	Banana	plasma membrane	70.85	73.56
KRG95962	Soybean	mitochondrion	70.48	72.08
KRH67670	Soybean	endoplasmic reticulum	69.74	71.32
AT3G09740.1	Thale cress	cytosol	68.27	69.55
Bra034085.1-P	Field mustard	cytosol	66.79	69.08
CDY22202	Canola	cytosol	66.79	68.3
CDY44726	Canola	cytosol	67.16	67.91
Bra029785.1-P	Field mustard	cytosol	67.16	67.91
CDY41590	Canola	cytosol	66.42	67.67
CDY41311	Canola	cytosol	66.05	67.55
TraesCS1D01G190400.1	Wheat	cytosol	53.51	61.7
KXG35475	Sorghum	cytosol, plastid	59.41	60.98
CDY40392	Canola	cytosol	22.51	59.22
Bra014333.1-P	Field mustard	cytosol	22.51	59.22
PGSC0003DMT400093449	Potato	cytosol	14.76	47.62
CDY39898	Canola	cytosol	21.4	44.62
CDY50077	Canola	cytosol	30.63	43.01
Bra027876.1-P	Field mustard	cytosol	22.88	40.79
CDX86009	Canola	plastid	22.14	37.5

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.3	MapMan:22.7.4.3	EntrezGene:8063555	UniProt:C5YV35	ncoils:Coil
EnsemblPlants:EES18638	ProteinID:EES18638	ProteinID:EES18638.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005886	GO:GO:0006612	GO:GO:0006810	GO:GO:0006886	GO:GO:0006906
GO:GO:0008150	GO:GO:0009506	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0031201	GO:GO:0048278	InterPro:IPR000727	PFAM:PF05739	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF204	SMART:SM00397	EnsemblPlantsGene:SORBI_3009G224600	SUPFAM:SSF58038
unigene:Sbi.4065	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0001A88DBC	RefSeq:XP_002440208.1

Description

hypothetical protein

Coordinates

chr9:+:56670457..56674025

Molecular Weight (calculated)

30264.0 Da

IEP (calculated)

4.923

GRAVY (calculated)

-0.512

Length

271 amino acids

Sequence
(BLAST)

001: MTVIDILTRV DAICQKYDKY DVDKLNGANV AGDDPFARLY ASVDADINQC VEKAETAKQE KNRAAVVALN AEIRRTKAKL IEEDLPKLQR LAVKKVKGLT
101: REEIATRSDL VAALPDRIQS IPDGSSTATK KNGTWGGASG SRTGGAIKFD STADGNFDDE YFKGTEESNQ FRREYEMRRM KQDEGLDVIG EGLETLKNMA
201: SDMNEELDRQ VPLMDEMDDK VDRANADLKN TNVRLKETVL QLRSSRNFCI DIILLCVILG IAAYLYNVLK K

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.