CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39898	Canola	cytosol	58.55	86.92
CDX86009	Canola	plastid	50.78	61.25
CDY22202	Canola	cytosol	63.73	46.42
CDY44726	Canola	cytosol	64.25	46.27
CDY41590	Canola	cytosol	63.21	45.86
CDY41311	Canola	cytosol	62.69	45.66
VIT_08s0040g02130.t01	Wine grape	cytosol	50.26	36.6
Solyc10g084210.1.1	Tomato	nucleus	50.26	36.6
KRH19848	Soybean	cytosol	49.74	36.23
KRH32439	Soybean	cytosol, plastid	49.22	35.85
PGSC0003DMT400093449	Potato	cytosol	15.54	35.71
KRG95962	Soybean	mitochondrion	48.19	35.09
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	48.19	34.83
KRH67670	Soybean	endoplasmic reticulum	47.15	34.34
GSMUA_Achr5P09270_001	Banana	plasma membrane	46.11	34.1
GSMUA_Achr9P00150_001	Banana	cytosol	46.11	33.46
Os05t0553700-01	Rice	plasma membrane	44.04	31.72
TraesCS1A01G379800.1	Wheat	cytosol	43.52	31.11
TraesCS1B01G401800.1	Wheat	cytosol	43.52	31.11
HORVU1Hr1G084160.1	Barley	cytosol	43.01	30.74
TraesCS1D01G387200.1	Wheat	cytosol	43.01	30.74
Zm00001d038931_P002	Maize	plasma membrane	43.01	30.74
EES18638	Sorghum	cytosol	43.01	30.63
CDX71736	Canola	cytosol	39.9	28.84
CDX86012	Canola	cytosol	27.98	28.72
CDY48918	Canola	cytosol, plastid	37.82	27.04
CDY53837	Canola	cytosol	40.41	26.9
CDX86011	Canola	cytosol	8.81	21.52
TraesCS1D01G190400.1	Wheat	cytosol	25.39	20.85
CDY40392	Canola	cytosol	5.18	9.71

Protein Annotations

EnsemblPlants:CDY50077	EnsemblPlantsGene:GSBRNA2T00095852001	Gene3D:1.20.5.110	ncoils:Coil	PANTHER:PTHR19957	PANTHER:PTHR19957:SF208
ProteinID:CDY50077	ProteinID:CDY50077.1	SEG:seg	SUPFAM:SSF58038	UniParc:UPI0004EDC757	UniProt:A0A078IJJ7
MapMan:13.4.2.3.3	MapMan:22.7.4.3	:	:	:	:

Description

BnaC05g30860DBnaC05g30860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJJ7]

Coordinates

chrLK032878:+:87410..88719

Molecular Weight (calculated)

21568.4 Da

IEP (calculated)

4.853

GRAVY (calculated)

-0.457

Length

193 amino acids

Sequence
(BLAST)

001: MSALASPSET IDDFVGHHGV SSVFSVRRNP KPIMEAERDS VGKSRRLLHL LSVKGLTTEE LAARNDLVLA LPARIEAIPD GTAGGPKSTS AWAPSTTSRP
101: DIKFDSDGRF DDDYFQESHE SSQFRQEFEM RKIKQAGLDA LKNMASDMNE ELDRQVSLMD EIDSKVVNMA SQFRAGEIVE VLFDHRLKFC MFD

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.