Factsheet for GSMUA_Achr6P22560_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P00150_001	Banana	cytosol	90.64	90.98
GSMUA_Achr5P09270_001	Banana	plasma membrane	87.64	89.66
VIT_08s0040g02130.t01	Wine grape	cytosol	86.52	87.17
Solyc10g084210.1.1	Tomato	nucleus	82.4	83.02
PGSC0003DMT400027162	Potato	cytosol	82.02	82.64
KRH32439	Soybean	cytosol, plastid	82.02	82.64
KRH19848	Soybean	cytosol	81.65	82.26
KRG95962	Soybean	mitochondrion	79.78	80.38
KRH67670	Soybean	endoplasmic reticulum	79.03	79.62
Zm00001d038931_P002	Maize	plasma membrane	77.9	77.04
AT3G09740.1	Thale cress	cytosol	76.4	76.69
Bra034085.1-P	Field mustard	cytosol	74.91	76.34
EES18638	Sorghum	cytosol	77.15	76.01
CDY44726	Canola	cytosol	76.03	75.75
Bra029785.1-P	Field mustard	cytosol	76.03	75.75
Os05t0553700-01	Rice	plasma membrane	75.66	75.37
CDY22202	Canola	cytosol	74.16	74.72
CDY41311	Canola	cytosol	74.16	74.72
TraesCS1A01G379800.1	Wheat	cytosol	75.28	74.44
CDY41590	Canola	cytosol	74.16	74.44
HORVU1Hr1G084160.1	Barley	cytosol	74.91	74.07
TraesCS1B01G401800.1	Wheat	cytosol	74.91	74.07
TraesCS1D01G387200.1	Wheat	cytosol	74.91	74.07
CDY40392	Canola	cytosol	25.47	66.02
Bra014333.1-P	Field mustard	cytosol	25.47	66.02
PGSC0003DMT400093449	Potato	cytosol	17.23	54.76
TraesCS1D01G190400.1	Wheat	cytosol	46.82	53.19
CDY39898	Canola	cytosol	24.34	50.0
CDY50077	Canola	cytosol	34.83	48.19
Bra027876.1-P	Field mustard	cytosol	26.22	46.05
CDX86009	Canola	plastid	24.72	41.25

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.3	MapMan:22.7.4.3	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0061025
EnsemblPlantsGene:GSMUA_Achr6G22560_001	EnsemblPlants:GSMUA_Achr6P22560_001	EnsemblPlants:GSMUA_Achr6T22560_001	InterPro:IPR000727	UniProt:M0T9A4	PFAM:PF05739
ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF129	SMART:SM00397	SUPFAM:SSF58038
InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000294CBD7	SEG:seg	:

Description

Syntaxin-71 [Source:GMGC_GENE;Acc:GSMUA_Achr6G22560_001]

Coordinates

chr6:+:20602247..20608085

Molecular Weight (calculated)

30260.0 Da

IEP (calculated)

5.313

GRAVY (calculated)

-0.535

Length

267 amino acids

Sequence
(BLAST)

001: MSVIDILTRV DAICKKYEKY DVDKLNADNV SGDDAFARLY ASVEADIESS LQKAEMASQE KNRAATVALN AEIRRTKARL LEEVPKLQRL ALKKVKGLSK
101: EELATRNDLV LALPDRIQSI PDGSTNGAKQ IGSWKASASR TEIRFDSTSD GRFESEYFQH TEESSQFRQE YEMRKMKQDQ GLDIISEGLD TLKNMAHDMN
201: EELDRQVPLM DEIDTKVDKA TSDLKNTNVR LKDTVNQLRS SRNFCIDIIL LCIILGIAAY LYNVLKK

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.