CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027876.1-P	Field mustard	cytosol	93.85	80.26
CDY50077	Canola	cytosol	86.92	58.55
CDX86009	Canola	plastid	63.85	51.88
CDY22202	Canola	cytosol	69.23	33.96
CDY44726	Canola	cytosol	69.23	33.58
CDY41311	Canola	cytosol	67.69	33.21
CDY41590	Canola	cytosol	67.69	33.08
PGSC0003DMT400093449	Potato	cytosol	17.69	27.38
VIT_08s0040g02130.t01	Wine grape	cytosol	52.31	25.66
Solyc10g084210.1.1	Tomato	nucleus	51.54	25.28
KRH19848	Soybean	cytosol	50.77	24.91
KRH32439	Soybean	cytosol, plastid	50.0	24.53
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	50.0	24.34
GSMUA_Achr5P09270_001	Banana	plasma membrane	48.46	24.14
KRG95962	Soybean	mitochondrion	48.46	23.77
GSMUA_Achr9P00150_001	Banana	cytosol	48.46	23.68
KRH67670	Soybean	endoplasmic reticulum	47.69	23.4
Os05t0553700-01	Rice	plasma membrane	46.92	22.76
CDX86012	Canola	cytosol	32.31	22.34
TraesCS1A01G379800.1	Wheat	cytosol	44.62	21.48
Zm00001d038931_P002	Maize	plasma membrane	44.62	21.48
TraesCS1B01G401800.1	Wheat	cytosol	44.62	21.48
HORVU1Hr1G084160.1	Barley	cytosol	44.62	21.48
EES18638	Sorghum	cytosol	44.62	21.4
TraesCS1D01G387200.1	Wheat	cytosol	43.85	21.11
CDX71736	Canola	cytosol	41.54	20.22
CDY53837	Canola	cytosol	42.31	18.97
CDY48918	Canola	cytosol, plastid	39.23	18.89
TraesCS1D01G190400.1	Wheat	cytosol	24.62	13.62
CDY40392	Canola	cytosol	3.85	4.85
CDX86011	Canola	cytosol	2.31	3.8

Protein Annotations

EnsemblPlants:CDY39898	EnsemblPlantsGene:GSBRNA2T00068750001	PANTHER:PTHR19957	PANTHER:PTHR19957:SF208	ProteinID:CDY39898	ProteinID:CDY39898.1
SEG:seg	UniParc:UPI0004EDE7ED	UniProt:A0A078HT10	MapMan:13.4.2.3.3	MapMan:22.7.4.3	:

Description

BnaA09g14800DBnaA09g14800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HT10]

Coordinates

chrLK032460:-:31812..32529

Molecular Weight (calculated)

14289.6 Da

IEP (calculated)

5.914

GRAVY (calculated)

-0.548

Length

130 amino acids

Sequence
(BLAST)

001: MSALASPSET IDDSVGHHGV SSVFSVRRNP KHDVKGLTTE ELAARNDLVL ALPARIEAIP DGTAGGPKST SAWAPSTMSH GRFDDDYFQE SHESSQFRHE
101: FEMRKIKQAG LDALKNMASD MNESWTVKFL

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.