Factsheet for VIT_08s0040g02130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g084210.1.1	Tomato	nucleus	88.68	88.68
PGSC0003DMT400027162	Potato	cytosol	88.68	88.68
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	87.17	86.52
KRH32439	Soybean	cytosol, plastid	86.42	86.42
KRH19848	Soybean	cytosol	86.04	86.04
KRG95962	Soybean	mitochondrion	83.4	83.4
GSMUA_Achr9P00150_001	Banana	cytosol	83.02	82.71
KRH67670	Soybean	endoplasmic reticulum	82.64	82.64
GSMUA_Achr5P09270_001	Banana	plasma membrane	78.87	80.08
Bra034085.1-P	Field mustard	cytosol	78.11	79.01
AT3G09740.1	Thale cress	cytosol	78.87	78.57
CDY44726	Canola	cytosol	79.25	78.36
Bra029785.1-P	Field mustard	cytosol	79.25	78.36
CDY41311	Canola	cytosol	77.74	77.74
CDY22202	Canola	cytosol	77.36	77.36
CDY41590	Canola	cytosol	77.36	77.07
Zm00001d038931_P002	Maize	plasma membrane	76.98	75.56
VIT_06s0004g03090.t01	Wine grape	cytosol	74.72	75.0
EES18638	Sorghum	cytosol	76.6	74.91
TraesCS1A01G379800.1	Wheat	cytosol	73.96	72.59
TraesCS1B01G401800.1	Wheat	cytosol	73.96	72.59
TraesCS1D01G387200.1	Wheat	cytosol	73.58	72.22
HORVU1Hr1G084160.1	Barley	cytosol	73.21	71.85
Os05t0553700-01	Rice	plasma membrane	72.45	71.64
CDY40392	Canola	cytosol	27.17	69.9
Bra014333.1-P	Field mustard	cytosol	27.17	69.9
VIT_15s0046g01850.t01	Wine grape	cytosol	34.72	53.49
TraesCS1D01G190400.1	Wheat	cytosol	46.42	52.34
CDY39898	Canola	cytosol	25.66	52.31
CDY50077	Canola	cytosol	36.6	50.26
Bra027876.1-P	Field mustard	cytosol	27.17	47.37
CDX86009	Canola	plastid	26.42	43.75

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100258582	wikigene:100258582	MapMan:13.4.2.3.3	MapMan:22.7.4.3	ProteinID:CBI32711
ProteinID:CBI32711.3	ncoils:Coil	UniProt:D7TQJ1	EMBL:FN596008	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987
GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0031201	GO:GO:0048278
InterPro:IPR000727	EntrezGene:LOC100258582	wikigene:LOC100258582	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF129	SMART:SM00397	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI00015CAA98	ArrayExpress:VIT_08s0040g02130	EnsemblPlantsGene:VIT_08s0040g02130	EnsemblPlants:VIT_08s0040g02130.t01	unigene:Vvi.6061
RefSeq:XP_002280272	RefSeq:XP_002280272.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:13239663..13250993

Molecular Weight (calculated)

29762.5 Da

IEP (calculated)

4.894

GRAVY (calculated)

-0.441

Length

265 amino acids

Sequence
(BLAST)

001: MTVIDILTRV DAICKKYDKY DIDKQKDLNV SGDDAFARLY AVVEADIEAA LQKADTASNE KNRASAVALN AEIRRTKARL LEEVPKLQRL AIKKVKGLST
101: EELAARNDLV LALPDRIQAI PDGAATAPKQ TGGWAASASR TEIKFDSDGR FDSEYFQQTE ESSQFRQEYE MRKMNQDQGL DVIAEGLDTL KNMAHDMNEE
201: LDRQVPLMDE IDTKVDKATA DLKNTNVRLK DTVNQLRSSR NFCIDIILLC IILGIAAYLY NVLKK

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.