Factsheet for TraesCS1B01G401800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G379800.1	Wheat	cytosol	99.63	99.63
TraesCS1D01G387200.1	Wheat	cytosol	99.26	99.26
HORVU1Hr1G084160.1	Barley	cytosol	97.78	97.78
Zm00001d038931_P002	Maize	plasma membrane	89.63	89.63
EES18638	Sorghum	cytosol	89.63	89.3
Os05t0553700-01	Rice	plasma membrane	86.67	87.31
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	74.07	74.91
VIT_08s0040g02130.t01	Wine grape	cytosol	72.59	73.96
Solyc10g084210.1.1	Tomato	nucleus	72.59	73.96
PGSC0003DMT400027162	Potato	cytosol	72.59	73.96
GSMUA_Achr9P00150_001	Banana	cytosol	72.22	73.31
KRH19848	Soybean	cytosol	71.85	73.21
KRH32439	Soybean	cytosol, plastid	71.85	73.21
GSMUA_Achr5P09270_001	Banana	plasma membrane	69.26	71.65
KRG95962	Soybean	mitochondrion	70.0	71.32
KRH67670	Soybean	endoplasmic reticulum	68.52	69.81
Bra034085.1-P	Field mustard	cytosol	65.93	67.94
AT3G09740.1	Thale cress	cytosol	66.67	67.67
CDY22202	Canola	cytosol	65.93	67.17
CDY44726	Canola	cytosol	66.67	67.16
Bra029785.1-P	Field mustard	cytosol	66.67	67.16
CDY41590	Canola	cytosol	65.56	66.54
CDY41311	Canola	cytosol	65.19	66.42
TraesCS5B01G187300.1	Wheat	cytosol, plastid	58.15	60.15
Bra014333.1-P	Field mustard	cytosol	22.59	59.22
CDY40392	Canola	cytosol	22.59	59.22
PGSC0003DMT400093449	Potato	cytosol	15.19	48.81
CDY39898	Canola	cytosol	21.48	44.62
CDY50077	Canola	cytosol	31.11	43.52
Bra027876.1-P	Field mustard	cytosol	22.96	40.79
CDX86009	Canola	plastid	22.22	37.5

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.3	MapMan:22.7.4.3	ncoils:Coil	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005886	GO:GO:0006612	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0009506	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	InterPro:IPR000727	PFAM:PF05739
ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF204	SMART:SM00397	SUPFAM:SSF58038
InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	EnsemblPlantsGene:TraesCS1B01G401800	EnsemblPlants:TraesCS1B01G401800.1	TIGR:cd15841
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:631998254..632001617

Molecular Weight (calculated)

30062.9 Da

IEP (calculated)

5.153

GRAVY (calculated)

-0.524

Length

270 amino acids

Sequence
(BLAST)

001: MTVIDILTRV DAICQKYDKY DAEKLNGANV AGEDPFARLY GSVDAEISQC VEKAEAARQE KNRATVVALN AEIRRAKAKL LEEDLPKLQR LALKKVKGLT
101: REELATRSDL VAALPDRIQS IPDGSSSATK KNGGWGASGS RPGGGVKFDS TSDGNFDDEY FKGTEESNKF RQEYEMRRMK QDEGLDVIGE GLATLKNMAS
201: DMNEELDRQV PLMDEMDDKV DRANADLKNT NVRLKQTILQ MRSSRNFCVD IILLCIILGI AAYLYNVLKK

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.