Factsheet for Solyc10g084210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027162	Potato	cytosol	98.87	98.87
VIT_08s0040g02130.t01	Wine grape	cytosol	88.68	88.68
KRH32439	Soybean	cytosol, plastid	83.02	83.02
KRH19848	Soybean	cytosol	82.64	82.64
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	83.02	82.4
KRG95962	Soybean	mitochondrion	81.51	81.51
KRH67670	Soybean	endoplasmic reticulum	80.75	80.75
GSMUA_Achr9P00150_001	Banana	cytosol	80.75	80.45
Bra034085.1-P	Field mustard	cytosol	77.36	78.24
GSMUA_Achr5P09270_001	Banana	plasma membrane	76.98	78.16
AT3G09740.1	Thale cress	cytosol	77.74	77.44
CDY44726	Canola	cytosol	77.74	76.87
Bra029785.1-P	Field mustard	cytosol	77.74	76.87
CDY41590	Canola	cytosol	76.98	76.69
CDY22202	Canola	cytosol	76.6	76.6
CDY41311	Canola	cytosol	76.6	76.6
Zm00001d038931_P002	Maize	plasma membrane	76.23	74.81
EES18638	Sorghum	cytosol	75.85	74.17
Os05t0553700-01	Rice	plasma membrane	73.96	73.13
TraesCS1A01G379800.1	Wheat	cytosol	73.96	72.59
TraesCS1B01G401800.1	Wheat	cytosol	73.96	72.59
TraesCS1D01G387200.1	Wheat	cytosol	73.58	72.22
HORVU1Hr1G084160.1	Barley	cytosol	73.21	71.85
CDY40392	Canola	cytosol	26.79	68.93
Bra014333.1-P	Field mustard	cytosol	26.79	68.93
Solyc11g069230.1.1	Tomato	cytosol	61.89	62.36
TraesCS1D01G190400.1	Wheat	cytosol	47.55	53.62
CDY39898	Canola	cytosol	25.28	51.54
CDY50077	Canola	cytosol	36.6	50.26
Bra027876.1-P	Field mustard	cytosol	26.79	46.71
CDX86009	Canola	plastid	26.42	43.75

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.3	MapMan:22.7.4.3	ncoils:Coil	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987
GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0031201	GO:GO:0048278
InterPro:IPR000727	UniProt:K4D3K7	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF129	SMART:SM00397	SUPFAM:SSF58038	EnsemblPlantsGene:Solyc10g084210.1	EnsemblPlants:Solyc10g084210.1.1	InterPro:Syntaxin/epimorphin_CS
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000276A25B	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:-:63847426..63851803

Molecular Weight (calculated)

29863.5 Da

IEP (calculated)

5.130

GRAVY (calculated)

-0.505

Length

265 amino acids

Sequence
(BLAST)

001: MSVIDILTRV DSICKKYDKY DIDKQKDSNV AGDDAFARLY SSVESDIETA LQKAETASIE KNRASIVAIN AEIRRTKARL LEEVPKLQRL AVRKVKGLSG
101: EELAARNDLV LALPDRINAI PDGSAAPPKQ SGGWRASGSR TEIKFDSDGQ FDNEYFQQTE ESSQFRQEYE MRKMRQDQGL DVIAEGLDTL KNMASDMNEE
201: LDRQVPLMDE IDAKVDRATA DLKNTNVRLK HTVNQLRSSR NFCIDIILLC IILGIAAYLY NVLKK

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.