Factsheet for GSMUA_Achr9P00150_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	90.98	90.64
GSMUA_Achr5P09270_001	Banana	plasma membrane	85.34	86.97
VIT_08s0040g02130.t01	Wine grape	cytosol	82.71	83.02
Solyc10g084210.1.1	Tomato	nucleus	80.45	80.75
PGSC0003DMT400027162	Potato	cytosol	80.08	80.38
KRH32439	Soybean	cytosol, plastid	78.57	78.87
KRH19848	Soybean	cytosol	78.57	78.87
KRG95962	Soybean	mitochondrion	76.69	76.98
AT3G09740.1	Thale cress	cytosol	75.94	75.94
KRH67670	Soybean	endoplasmic reticulum	75.19	75.47
Bra034085.1-P	Field mustard	cytosol	74.06	75.19
Bra029785.1-P	Field mustard	cytosol	75.56	75.0
CDY44726	Canola	cytosol	75.56	75.0
Zm00001d038931_P002	Maize	plasma membrane	75.19	74.07
CDY41311	Canola	cytosol	73.68	73.96
Os05t0553700-01	Rice	plasma membrane	74.44	73.88
CDY22202	Canola	cytosol	73.31	73.58
EES18638	Sorghum	cytosol	74.81	73.43
CDY41590	Canola	cytosol	73.31	73.31
TraesCS1A01G379800.1	Wheat	cytosol	73.68	72.59
HORVU1Hr1G084160.1	Barley	cytosol	73.31	72.22
TraesCS1D01G387200.1	Wheat	cytosol	73.31	72.22
TraesCS1B01G401800.1	Wheat	cytosol	73.31	72.22
Bra014333.1-P	Field mustard	cytosol	25.94	66.99
CDY40392	Canola	cytosol	25.94	66.99
PGSC0003DMT400093449	Potato	cytosol	16.92	53.57
TraesCS1D01G190400.1	Wheat	cytosol	46.62	52.77
CDY39898	Canola	cytosol	23.68	48.46
CDY50077	Canola	cytosol	33.46	46.11
Bra027876.1-P	Field mustard	cytosol	25.56	44.74
CDX86009	Canola	plastid	24.06	40.0

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.3	MapMan:22.7.4.3	ncoils:Coil	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0061025	EnsemblPlantsGene:GSMUA_Achr9G00150_001	EnsemblPlants:GSMUA_Achr9P00150_001	EnsemblPlants:GSMUA_Achr9T00150_001	InterPro:IPR000727	UniProt:M0TW72
PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF208	SMART:SM00397
SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000294D2E7	SEG:seg

Description

Syntaxin-71 [Source:GMGC_GENE;Acc:GSMUA_Achr9G00150_001]

Coordinates

chr9:+:205127..209586

Molecular Weight (calculated)

30076.8 Da

IEP (calculated)

5.124

GRAVY (calculated)

-0.500

Length

266 amino acids

Sequence
(BLAST)

001: MSVIDILTRV DAICKKYDKY DVDKLNASNV SGDDAFARLY ASIESDIDSA VQKAERACQE KNRAAAVALN AEIRRTKARL SEEIPKLQRL ALKKVKGLSK
101: EELAIRNDLV LALPDRIQSI PDGSTNGAKQ TGSWTSASHM EIRFDSNSDG MFESEYFQQT EESSQFRQEY EMRKMKQDQG LDIISEGLDT LKNMAHDMNE
201: ELDRQVPLID EIDSKVDKAT SDLKNTNVRL KDTINQLRSS RNFCIDIILL CIILGIAAYL YNVLKK

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.