Factsheet for Os05t0553700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 19502382
golgi: 25047511
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18638	Sorghum	cytosol	90.3	89.3
Zm00001d038931_P002	Maize	plasma membrane	89.55	88.89
HORVU1Hr1G084160.1	Barley	cytosol	88.43	87.78
TraesCS1A01G379800.1	Wheat	cytosol	87.69	87.04
TraesCS1D01G387200.1	Wheat	cytosol	87.31	86.67
TraesCS1B01G401800.1	Wheat	cytosol	87.31	86.67
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	75.37	75.66
GSMUA_Achr9P00150_001	Banana	cytosol	73.88	74.44
Solyc10g084210.1.1	Tomato	nucleus	73.13	73.96
PGSC0003DMT400027162	Potato	cytosol	73.13	73.96
KRH19848	Soybean	cytosol	72.39	73.21
KRH32439	Soybean	cytosol, plastid	72.39	73.21
GSMUA_Achr5P09270_001	Banana	plasma membrane	70.9	72.8
VIT_08s0040g02130.t01	Wine grape	cytosol	71.64	72.45
KRG95962	Soybean	mitochondrion	71.64	72.45
KRH67670	Soybean	endoplasmic reticulum	70.9	71.7
Bra034085.1-P	Field mustard	cytosol	67.54	69.08
AT3G09740.1	Thale cress	cytosol	68.28	68.8
CDY22202	Canola	cytosol	67.54	68.3
Bra029785.1-P	Field mustard	cytosol	67.91	67.91
CDY44726	Canola	cytosol	67.91	67.91
CDY41311	Canola	cytosol	66.79	67.55
CDY41590	Canola	cytosol	66.42	66.92
TraesCS1D01G190400.1	Wheat	cytosol	53.73	61.28
Os09t0359700-00	Rice	cytosol	47.39	58.53
CDY40392	Canola	cytosol	22.39	58.25
Bra014333.1-P	Field mustard	cytosol	22.39	58.25
PGSC0003DMT400093449	Potato	cytosol	14.93	47.62
CDY39898	Canola	cytosol	22.76	46.92
CDY50077	Canola	cytosol	31.72	44.04
Bra027876.1-P	Field mustard	cytosol	24.25	42.76
CDX86009	Canola	plastid	23.13	38.75
Os05t0553800-01	Rice	nucleus	9.7	13.83

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.3	MapMan:22.7.4.3	EntrezGene:4339549	UniProt:A0A0P0WQ70	ProteinID:BAS95242.1
ncoils:Coil	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886
GO:GO:0006612	GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009506
GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0031201
GO:GO:0048278	GO:GO:0061025	InterPro:IPR000727	EnsemblPlantsGene:Os05g0553700	EnsemblPlants:Os05t0553700-01	PFAM:PF05739
ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF204	SMART:SM00397	SUPFAM:SSF58038
InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0000E125D4	RefSeq:XP_015639751.1	:

Description

Similar to Syntaxin 72. (Os05t0553700-01)

Coordinates

chr5:+:27530255..27533764

Molecular Weight (calculated)

30067.8 Da

IEP (calculated)

4.948

GRAVY (calculated)

-0.551

Length

268 amino acids

Sequence
(BLAST)

001: MSVIDILTRV DSICKKYDKY DVERLNGANV AGEDPFARLY GSIDADINEC VEKAEAAKQE KNRATVVALN AEIRRTKAKL VEEDLPKLQR LALKKVKGLT
101: KEELATRSDL VAALPDRIQS IPDGSSSAKK NGTWGASGSR TGGAIKFDTS DGNFDDEYFK GTEESNQFRR EYEMRKMKQD EGLDIIGEGL ETLKNMASDM
201: NEELDRQVPL MDEMDEKVDR ANTDLKNTNV RLKETVLQLR SSRNFCIDIV LLCVILGIAA YLYNVLKK

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.