CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029785.1-P	Field mustard	cytosol	100.0	100.0
CDY41590	Canola	cytosol	97.01	97.74
CDY22202	Canola	cytosol	94.4	95.47
CDY41311	Canola	cytosol	94.03	95.09
AT3G09740.1	Thale cress	cytosol	94.03	94.74
CDY40392	Canola	cytosol	33.58	87.38
VIT_08s0040g02130.t01	Wine grape	cytosol	78.36	79.25
Solyc10g084210.1.1	Tomato	nucleus	76.87	77.74
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	75.75	76.03
GSMUA_Achr9P00150_001	Banana	cytosol	75.0	75.56
GSMUA_Achr5P09270_001	Banana	plasma membrane	69.78	71.65
CDY39898	Canola	cytosol	33.58	69.23
Os05t0553700-01	Rice	plasma membrane	67.91	67.91
EES18638	Sorghum	cytosol	67.91	67.16
Zm00001d038931_P002	Maize	plasma membrane	67.54	67.04
TraesCS1A01G379800.1	Wheat	cytosol	67.16	66.67
TraesCS1B01G401800.1	Wheat	cytosol	67.16	66.67
HORVU1Hr1G084160.1	Barley	cytosol	66.79	66.3
TraesCS1D01G387200.1	Wheat	cytosol	66.79	66.3
CDY50077	Canola	cytosol	46.27	64.25
CDX71736	Canola	cytosol	63.43	63.67
CDY48918	Canola	cytosol, plastid	62.31	61.85
CDX86009	Canola	plastid	35.45	59.38
CDX86011	Canola	cytosol	16.79	56.96
CDY53837	Canola	cytosol	60.07	55.52
CDX86012	Canola	cytosol	38.81	55.32
TraesCS1D01G190400.1	Wheat	cytosol	43.66	49.79

Protein Annotations

EnsemblPlants:CDY44726	EnsemblPlantsGene:GSBRNA2T00080705001	Gene3D:1.20.5.110	GO:A0A078I4B9	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil	PANTHER:PTHR19957	PANTHER:PTHR19957:SF208
PFAM:PF05739	PFscan:PS50192	ProteinID:CDY44726	ProteinID:CDY44726.1	SMART:SM00397	SUPFAM:SSF58038
TMHMM:TMhelix	UniParc:UPI0002547B2F	UniProt:A0A078I4B9	MapMan:13.4.2.3.3	MapMan:22.7.4.3	:

Description

BnaA05g28800DBnaA05g28800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4B9]

Coordinates

chrLK032599:+:205109..207106

Molecular Weight (calculated)

30121.8 Da

IEP (calculated)

4.912

GRAVY (calculated)

-0.499

Length

268 amino acids

Sequence
(BLAST)

001: MTVIDILTRV DTICKKYDKY DVDKQRESNI SGDDAFARLY GAFETQIETA LEKAEIVTKE KNRASAVAMN AEIRRTKARL SEEVPKLQRL ALKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWAPSTTS RPDIKFDSDG RFDDDYFQES HESSQFRQEF EMRKIKQASG DQGLDMISEG LDALKNMASD
201: MNEELDRQVP LMDEIDSKVD RATSDLKNTN VRLKDTVNQL RSSRNFCIDI VLLCIVLGIA AYLYNVLK

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.