CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71736	Canola	cytosol	89.63	90.64
AT3G61450.2	Thale cress	cytosol, plastid	80.0	81.82
Bra007605.1-P	Field mustard	cytosol, plastid	75.93	81.35
CDY44726	Canola	cytosol	61.85	62.31
CDY41590	Canola	cytosol	61.11	62.03
CDY22202	Canola	cytosol	60.0	61.13
CDY41311	Canola	cytosol	60.0	61.13
CDY40392	Canola	cytosol	22.96	60.19
CDY53837	Canola	cytosol	53.33	49.66
CDX86012	Canola	cytosol	34.44	49.47
CDX86011	Canola	cytosol	14.44	49.37
CDY39898	Canola	cytosol	18.89	39.23
CDY50077	Canola	cytosol	27.04	37.82
CDX86009	Canola	plastid	18.52	31.25

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.3	MapMan:22.7.4.3	GO:A0A078III6	UniProt:A0A078III6	EnsemblPlants:CDY48918
ProteinID:CDY48918	ProteinID:CDY48918.1	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0061025	EnsemblPlantsGene:GSBRNA2T00092005001
InterPro:IPR000727	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF129
SMART:SM00397	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0004EE1D70
SEG:seg	:	:	:	:	:

Description

BnaA09g39190DBnaA09g39190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078III6]

Coordinates

chrLK032801:-:42062..44312

Molecular Weight (calculated)

30766.7 Da

IEP (calculated)

5.026

GRAVY (calculated)

-0.491

Length

270 amino acids

Sequence
(BLAST)

001: MGVVDLITRV DSICKKYEKY DLVKQREEAN ISGDDAFSRL YSSFESALET LLQKTEEFSS ETNRAKAVAM NAEIRRTKAR LLEGVPKLQR LALKRVKGLS
101: QEEFDARNDM VLSLREKIES VPEGSVPING WTASTSYTNI RLDTNVYDDR VDSGYFQRTE ESGNFKQEYK MRRMKQASLC LQDQGLDFIA EGLDTLKNMA
201: QDINEELDRQ EPLVDEIDTK IDKASTDLKS TNVKLKDTVT KLRSSRNFCI DIILLCILLG IAAFIYNSVK

Best Arabidopsis Sequence Match ( AT3G61450.2 )
(BLAST)

001: MGVIDLITRV DSICKKYEKY DINRQRDANV SGDDAFSRLY SAVEYALETV LQKTEDLSSE TNKAKAVAMN AEIRRTKARL LEGIPKLQRL SLKKVKGLSK
101: EELDARNDLV LSLRDKIEAI PESSAPVVGG WEASTSYSNI RFDTNVSDDR IGSEYFQPTG ESDQFKQEYE MKRIKQDQGL DYIAEGLDTL KNMAQDINEE
201: LDRQEPLMDE IDTKIDKAAT DLKSTNVRLK DTVTKLRSSR NFCIDIILLC ILLGIAAFIY NSVK

Arabidopsis Description

SYP73Syntaxin of plants 73 [Source:UniProtKB/TrEMBL;Acc:F4JEA3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.