CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038292.1-P	Field mustard	cytosol	85.86	94.32
CDX86012	Canola	cytosol	61.03	94.15
AT3G45280.3	Thale cress	cytosol	76.55	83.15
CDX86011	Canola	cytosol	18.97	69.62
VIT_06s0004g03090.t01	Wine grape	cytosol	61.72	67.8
CDY41311	Canola	cytosol	56.55	61.89
CDY22202	Canola	cytosol	56.21	61.51
KRH26397	Soybean	cytosol	56.21	61.51
CDY41590	Canola	cytosol	56.21	61.28
PGSC0003DMT400020948	Potato	cytosol, plastid	55.52	61.22
KRH22921	Soybean	cytosol	55.86	61.13
CDY44726	Canola	cytosol	55.52	60.07
Solyc11g069230.1.1	Tomato	cytosol	53.79	59.32
Os09t0359700-00	Rice	cytosol	42.76	57.14
CDY40392	Canola	cytosol	19.31	54.37
CDX71736	Canola	cytosol	50.0	54.31
KXG35475	Sorghum	cytosol, plastid	49.31	54.17
CDY48918	Canola	cytosol, plastid	49.66	53.33
TraesCS5B01G187300.1	Wheat	cytosol, plastid	47.93	53.26
TraesCS5D01G194900.1	Wheat	cytosol	46.55	52.12
Zm00001d020187_P001	Maize	cytosol, plastid	42.41	50.62
HORVU5Hr1G056780.4	Barley	cytosol	48.28	48.78
CDY39898	Canola	cytosol	18.97	42.31
CDY50077	Canola	cytosol	26.9	40.41
CDX86009	Canola	plastid	18.62	33.75

Protein Annotations

EnsemblPlants:CDY53837	EnsemblPlantsGene:GSBRNA2T00011527001	Gene3D:1.20.5.110	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil
PANTHER:PTHR19957	PANTHER:PTHR19957:SF208	PFAM:PF05739	PFscan:PS50192	ProteinID:CDY53837	ProteinID:CDY53837.1
SEG:seg	SMART:SM00397	SUPFAM:SSF58038	UniParc:UPI0004EE74B3	UniProt:A0A078IV19	MapMan:13.4.2.3.3
MapMan:22.7.4.3	:	:	:	:	:

Description

BnaA06g38790DBnaA06g38790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IV19]

Coordinates

chrLK033242:-:22951..24703

Molecular Weight (calculated)

32868.1 Da

IEP (calculated)

4.902

GRAVY (calculated)

-0.464

Length

290 amino acids

Sequence
(BLAST)

001: MTVINIIFRV EEICKKYDKY DVDKQRELGA SGDDAFSRLF NSIDTDIESV VHKAELASTE TNRAAAVALN AEVRRTKARL AEDVVKLQKL AVKKVKGLTK
101: EERESRCDLV IALADRIQVI PDGHERQANS EWGGASAPNK NIKFDISEED MDDGFFQQTE ESSQFRQEYE MRRKKQASKI HRSNLFFFDN EDEGLDVISE
201: GLDALKNLAR DMNEELDKQV PLMDEMETKV DGATSDLKNT NVRLKQQLVK MRSSRNFCID IILLCVCSEL KLVTASTDIL IAIVKPLVTS

Best Arabidopsis Sequence Match ( AT3G45280.1 )
(BLAST)

001: MPVIDIIFRV DEICKKYDKY DIDKHREIGA SGDDAFSRLF TSIDSDIEAV LRKAELASTE KNRAAAVAMN AEVRRTKARL AEDVVKLQKL AVKKIKGLTR
101: EERESRCDLV IALADRLQAI PDGNEHGAKQ ANSDWGGASA PNKNIKFDMS EEDMDDGFFQ QSEESSQFRQ EYEMRRKKQD EGLDIISEGL DALKNLARDM
201: NEELDKQVPL MEEMETKVDG ATSDLKNTNV RLKKQLVQMR SSRNFCIDII LLCVILGIVS YIYNALN

Arabidopsis Description

SYP72SYP72 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.