Factsheet for VIT_06s0004g03090.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g02130.t01	Wine grape	cytosol	75.0	74.72
KRH26397	Soybean	cytosol	70.83	70.57
Bra038292.1-P	Field mustard	cytosol	70.08	70.08
KRH22921	Soybean	cytosol	68.94	68.68
AT3G45280.3	Thale cress	cytosol	68.56	67.79
PGSC0003DMT400020948	Potato	cytosol, plastid	65.53	65.78
CDX86012	Canola	cytosol	45.83	64.36
Solyc11g069230.1.1	Tomato	cytosol	63.26	63.5
CDY53837	Canola	cytosol	67.8	61.72
Os09t0359700-00	Rice	cytosol	48.48	58.99
KXG35475	Sorghum	cytosol, plastid	57.95	57.95
TraesCS5B01G187300.1	Wheat	cytosol, plastid	56.82	57.47
TraesCS5D01G194900.1	Wheat	cytosol	55.3	56.37
Zm00001d020187_P001	Maize	cytosol, plastid	51.14	55.56
HORVU5Hr1G056780.4	Barley	cytosol	56.82	52.26
VIT_15s0046g01850.t01	Wine grape	cytosol	33.33	51.16

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100258712	wikigene:100258712	MapMan:13.4.2.3.3	MapMan:22.7.4.3	ProteinID:CBI16291
ProteinID:CBI16291.3	ncoils:Coil	UniProt:D7SKW3	EMBL:FN594951	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987
GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0031201	GO:GO:0048278
InterPro:IPR000727	EntrezGene:LOC100258712	wikigene:LOC100258712	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF208	SMART:SM00397	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI0001BE102B	ArrayExpress:VIT_06s0004g03090	EnsemblPlantsGene:VIT_06s0004g03090	EnsemblPlants:VIT_06s0004g03090.t01	RefSeq:XP_002282237
RefSeq:XP_002282237.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:3829805..3835140

Molecular Weight (calculated)

29918.9 Da

IEP (calculated)

5.285

GRAVY (calculated)

-0.320

Length

264 amino acids

Sequence
(BLAST)

001: MSVIDIIFRV DQICKKFDKY DVDKQRDLNA YGDDAFARLY ASVEANIESA LHKSEISLIE TNRAAAVALN AEIRRTKARL LEEVVKLQKL VLKKVKGLTK
101: EELSIRNDLV LALPERIRAI PDGSMAGAKQ TANWAASASH KNIMFDSSDG NFDSEFFQQS EESSQFRQEY EMRRMKQASL DVISEGLDTL KNLANDMNEE
201: LDRQVPLIDE IDTKVDKATS DIKNTNVRLK ETVTKMRSSQ NFCIDIILLC VILGIASYLY NVLK

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.