Factsheet for Zm00001d020187_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35475	Sorghum	cytosol, plastid	79.01	72.73
TraesCS5B01G187300.1	Wheat	cytosol, plastid	67.08	62.45
TraesCS5D01G194900.1	Wheat	cytosol	65.02	61.0
HORVU5Hr1G056780.4	Barley	cytosol	65.84	55.75
Os09t0359700-00	Rice	cytosol	49.38	55.3
VIT_06s0004g03090.t01	Wine grape	cytosol	55.56	51.14
PGSC0003DMT400020948	Potato	cytosol, plastid	53.09	49.05
Solyc11g069230.1.1	Tomato	cytosol	53.09	49.05
AT3G45280.3	Thale cress	cytosol	53.5	48.69
Zm00001d038931_P002	Maize	plasma membrane	53.5	48.15
Bra038292.1-P	Field mustard	cytosol	52.26	48.11
KRH22921	Soybean	cytosol	52.26	47.92
KRH26397	Soybean	cytosol	51.44	47.17
CDY53837	Canola	cytosol	50.62	42.41
CDX86012	Canola	cytosol	30.86	39.89

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.3	MapMan:22.7.4.3	UniProt:A0A1D6I2Q2	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0061025	InterPro:IPR000727	ProteinID:ONM54447.1	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF129	SMART:SM00397	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI0008DB3507	EnsemblPlantsGene:Zm00001d020187	EnsemblPlants:Zm00001d020187_P001	EnsemblPlants:Zm00001d020187_T001	SEG:seg

Description

Syntaxin-72

Coordinates

chr7:+:98540988..98545495

Molecular Weight (calculated)

27747.4 Da

IEP (calculated)

8.989

GRAVY (calculated)

-0.438

Length

243 amino acids

Sequence
(BLAST)

001: MSMIDVITRV DAICKKYERY DTDKHGDPFS RLYAAVDAGI DAAIEVSGLP SLGLPLAALK TKSARAAKKK KNRAASVTLD ADVRRTKARL LEVVVKLQKV
101: AARKVNGLSP EEKVSRAAER LEEGYFQTSE ESEQFRREYE MRRMKQTEFR WDVQDEGLDF VSQGLDTLKN LAEDMNQELD RQVPLIDEID TKVDKASLEI
201: RRTNVRLRQT VNQFRSTRNF TIDIILICII LGIATYLYNI LSQ

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.