Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038292.1-P | Field mustard | cytosol | 87.27 | 88.26 |
| CDX86012 | Canola | cytosol | 56.93 | 80.85 |
| CDY53837 | Canola | cytosol | 83.15 | 76.55 |
| VIT_06s0004g03090.t01 | Wine grape | cytosol | 67.79 | 68.56 |
| AT3G09740.1 | Thale cress | cytosol | 65.17 | 65.41 |
| KRH26397 | Soybean | cytosol | 64.79 | 65.28 |
| KRH22921 | Soybean | cytosol | 64.04 | 64.53 |
| PGSC0003DMT400020948 | Potato | cytosol, plastid | 61.42 | 62.36 |
| Solyc11g069230.1.1 | Tomato | cytosol | 59.55 | 60.46 |
| Os09t0359700-00 | Rice | cytosol | 46.44 | 57.14 |
| KXG35475 | Sorghum | cytosol, plastid | 56.18 | 56.82 |
| TraesCS5B01G187300.1 | Wheat | cytosol, plastid | 55.06 | 56.32 |
| AT3G61450.2 | Thale cress | cytosol, plastid | 54.68 | 55.3 |
| TraesCS5D01G194900.1 | Wheat | cytosol | 53.56 | 55.21 |
| Zm00001d020187_P001 | Maize | cytosol, plastid | 48.69 | 53.5 |
| HORVU5Hr1G056780.4 | Barley | cytosol | 55.43 | 51.57 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:13.4.2.3.3 | MapMan:22.7.4.3 | EntrezGene:823666 | UniProt:A0A178VLS6 | ProteinID:AEE78017.1 |
| EMBL:AF355758 | ProteinID:ANM64890.1 | ArrayExpress:AT3G45280 | EnsemblPlantsGene:AT3G45280 | RefSeq:AT3G45280 | TAIR:AT3G45280 |
| RefSeq:AT3G45280-TAIR-G | EnsemblPlants:AT3G45280.3 | ProteinID:CAB72477.1 | ncoils:Coil | EMBL:DQ446736 | GO:GO:0000149 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006906 |
| GO:GO:0008150 | GO:GO:0008565 | GO:GO:0009987 | GO:GO:0012505 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031201 | GO:GO:0048278 | GO:GO:0061025 | InterPro:IPR000727 |
| RefSeq:NP_001319688.1 | RefSeq:NP_566878.1 | ProteinID:OAP05752.1 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF208 | UniProt:Q1PEI2 | UniProt:Q94KK6 | SMART:SM00397 | SUPFAM:SSF58038 |
| Symbol:SYP72 | InterPro:Syntaxin/epimorphin_CS | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI00001362EF | SEG:seg |
Description
SYP72SYP72 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS6]
Coordinates
chr3:-:16610850..16613521
Molecular Weight (calculated)
30286.1 Da
IEP (calculated)
4.870
GRAVY (calculated)
-0.542
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVIDIIFRV DEICKKYDKY DIDKHREIGA SGDDAFSRLF TSIDSDIEAV LRKAELASTE KNRAAAVAMN AEVRRTKARL AEDVVKLQKL AVKKIKGLTR
101: EERESRCDLV IALADRLQAI PDGNEHGAKQ ANSDWGGASA PNKNIKFDMS EEDMDDGFFQ QSEESSQFRQ EYEMRRKKQD EGLDIISEGL DALKNLARDM
201: NEELDKQVPL MEEMETKVDG ATSDLKNTNV RLKKQLVQMR SSRNFCIDII LLCVILGIVS YIYNALN
101: EERESRCDLV IALADRLQAI PDGNEHGAKQ ANSDWGGASA PNKNIKFDMS EEDMDDGFFQ QSEESSQFRQ EYEMRRKKQD EGLDIISEGL DALKNLARDM
201: NEELDKQVPL MEEMETKVDG ATSDLKNTNV RLKKQLVQMR SSRNFCIDII LLCVILGIVS YIYNALN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.