Factsheet for Bra038292.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86012	Canola	cytosol	66.67	93.62
AT3G45280.3	Thale cress	cytosol	88.26	87.27
CDY53837	Canola	cytosol	94.32	85.86
VIT_06s0004g03090.t01	Wine grape	cytosol	70.08	70.08
Bra034085.1-P	Field mustard	cytosol	63.64	64.12
KRH26397	Soybean	cytosol	64.02	63.77
KRH22921	Soybean	cytosol	63.64	63.4
PGSC0003DMT400020948	Potato	cytosol, plastid	62.12	62.36
Bra029785.1-P	Field mustard	cytosol	63.26	62.31
Solyc11g069230.1.1	Tomato	cytosol	60.23	60.46
Os09t0359700-00	Rice	cytosol	46.97	57.14
KXG35475	Sorghum	cytosol, plastid	56.44	56.44
TraesCS5B01G187300.1	Wheat	cytosol, plastid	54.92	55.56
Bra014333.1-P	Field mustard	cytosol	21.59	55.34
TraesCS5D01G194900.1	Wheat	cytosol	53.41	54.44
Zm00001d020187_P001	Maize	cytosol, plastid	48.11	52.26
HORVU5Hr1G056780.4	Barley	cytosol	55.3	50.87
Bra007605.1-P	Field mustard	cytosol, plastid	43.18	45.24
Bra027876.1-P	Field mustard	cytosol	22.73	39.47

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.3	MapMan:22.7.4.3	EnsemblPlantsGene:Bra038292	EnsemblPlants:Bra038292.1	EnsemblPlants:Bra038292.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0061025	InterPro:IPR000727	UniProt:M4FB26
PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF208	SMART:SM00397
SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000253EEA5	SEG:seg

Description

AT3G45280 (E=8e-124) SYP72, ATSYP72 | SYP72 (SYNTAXIN OF PLANTS 72); protein transporter

Coordinates

chrA06:+:11492532..11494177

Molecular Weight (calculated)

29998.7 Da

IEP (calculated)

4.790

GRAVY (calculated)

-0.516

Length

264 amino acids

Sequence
(BLAST)

001: MTVINIIFRV EEICKKYDKY DVDKQRELGA SGDDAFSRLF NSIDTDIESV VHKAELASTE TNRAAAVALN AEVRRTKARL AEDVVKLQKL AVKKVKGLTK
101: EERESRCDLV IALADRIQVI PDGHERQANS EWGGASAPNK NIKFDISEED MDDGFFQQTE ESSQFRQEYE MRRKKQDEGL DVISEGLDAL KNLARDMNEE
201: LDKQVPLMDE METKVDGATS DLKNTNVRLK QQLVKMRSSR NFCIDIILLC VVLGIISYIY NALN

Best Arabidopsis Sequence Match ( AT3G45280.1 )
(BLAST)

001: MPVIDIIFRV DEICKKYDKY DIDKHREIGA SGDDAFSRLF TSIDSDIEAV LRKAELASTE KNRAAAVAMN AEVRRTKARL AEDVVKLQKL AVKKIKGLTR
101: EERESRCDLV IALADRLQAI PDGNEHGAKQ ANSDWGGASA PNKNIKFDMS EEDMDDGFFQ QSEESSQFRQ EYEMRRKKQD EGLDIISEGL DALKNLARDM
201: NEELDKQVPL MEEMETKVDG ATSDLKNTNV RLKKQLVQMR SSRNFCIDII LLCVILGIVS YIYNALN

Arabidopsis Description

SYP72SYP72 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.