Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- golgi 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400020948 | Potato | cytosol, plastid | 91.64 | 91.64 |
| VIT_06s0004g03090.t01 | Wine grape | cytosol | 63.5 | 63.26 |
| Solyc10g084210.1.1 | Tomato | nucleus | 62.36 | 61.89 |
| Bra038292.1-P | Field mustard | cytosol | 60.46 | 60.23 |
| AT3G45280.3 | Thale cress | cytosol | 60.46 | 59.55 |
| KRH22921 | Soybean | cytosol | 58.56 | 58.11 |
| KRH26397 | Soybean | cytosol | 58.56 | 58.11 |
| TraesCS5B01G187300.1 | Wheat | cytosol, plastid | 56.65 | 57.09 |
| Os09t0359700-00 | Rice | cytosol | 46.39 | 56.22 |
| KXG35475 | Sorghum | cytosol, plastid | 56.27 | 56.06 |
| TraesCS5D01G194900.1 | Wheat | cytosol | 54.75 | 55.6 |
| CDY53837 | Canola | cytosol | 59.32 | 53.79 |
| CDX86012 | Canola | cytosol | 38.02 | 53.19 |
| Zm00001d020187_P001 | Maize | cytosol, plastid | 49.05 | 53.09 |
| HORVU5Hr1G056780.4 | Barley | cytosol | 54.75 | 50.17 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:13.4.2.3.3 | MapMan:22.7.4.3 | ncoils:Coil | GO:GO:0000149 | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0012505 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031201 | GO:GO:0048278 |
| InterPro:IPR000727 | UniProt:K4DA79 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF129 | SMART:SM00397 | SUPFAM:SSF58038 | EnsemblPlantsGene:Solyc11g069230.1 | EnsemblPlants:Solyc11g069230.1.1 | InterPro:Syntaxin/epimorphin_CS |
| TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI000276A930 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr11:+:53865957..53868775
Molecular Weight (calculated)
29938.8 Da
IEP (calculated)
5.529
GRAVY (calculated)
-0.578
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVIDIILRV DTICKKYEKY DVEKHSANDS PGDAFARLYS SFESQIDATS EKAEMAAMET NRAKAVAMKA EVRRTKARLM DEIKKLHKLA QKKVKGLSQE
101: ELETRGDLVH MLSERIQAIP DGSINAAKTT GGRGTSSFNK NIKFDSEGQF NEGFYEQTEE GTHFRSEYEI RKMKQDEGLD VISEGLDTLK NLARDMNEEL
201: DRQVPLMDEI DTKVDKATTD IENNNVRLRD NINKIRSSKN IFIDIILICI LLGIMAYLYN VLK
101: ELETRGDLVH MLSERIQAIP DGSINAAKTT GGRGTSSFNK NIKFDSEGQF NEGFYEQTEE GTHFRSEYEI RKMKQDEGLD VISEGLDTLK NLARDMNEEL
201: DRQVPLMDEI DTKVDKATTD IENNNVRLRD NINKIRSSKN IFIDIILICI LLGIMAYLYN VLK
001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK
Arabidopsis Description
SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.