Factsheet for TraesCS5B01G187300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G194900.1	Wheat	cytosol	97.32	98.07
HORVU5Hr1G056780.4	Barley	cytosol	91.57	83.28
Os09t0359700-00	Rice	cytosol	59.77	71.89
KXG35475	Sorghum	cytosol, plastid	72.41	71.59
Zm00001d020187_P001	Maize	cytosol, plastid	62.45	67.08
TraesCS1B01G401800.1	Wheat	cytosol	60.15	58.15
PGSC0003DMT400020948	Potato	cytosol, plastid	57.47	57.03
VIT_06s0004g03090.t01	Wine grape	cytosol	57.47	56.82
Solyc11g069230.1.1	Tomato	cytosol	57.09	56.65
KRH26397	Soybean	cytosol	57.47	56.6
KRH22921	Soybean	cytosol	57.09	56.23
AT3G45280.3	Thale cress	cytosol	56.32	55.06
Bra038292.1-P	Field mustard	cytosol	55.56	54.92
CDX86012	Canola	cytosol	35.63	49.47
CDY53837	Canola	cytosol	53.26	47.93

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.3	MapMan:22.7.4.3	ncoils:Coil	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	InterPro:IPR000727	PFAM:PF05739	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF129	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix
InterPro:T_SNARE_dom	EnsemblPlantsGene:TraesCS5B01G187300	EnsemblPlants:TraesCS5B01G187300.1	TIGR:cd15841	SEG:seg	:

Description

No Description!

Coordinates

chr5B:+:339490392..339492232

Molecular Weight (calculated)

29192.9 Da

IEP (calculated)

4.846

GRAVY (calculated)

-0.440

Length

261 amino acids

Sequence
(BLAST)

001: MSMIDVLTRV DAICKKYERY DADKHRNDAA DPFSRLYADM DAVIDEAIEK SERAARETNR AAAVTLNAGV RRTKARLLEE VAKLQKLAGK KMKGVSREEM
101: ALRPDLVSAL HQRIQSIPDG GGAADQNGGG NARPGIKFDS SVAAETLDEG YFQTSEESEA FRMEFEMLRI KQDEGLDLIS EGLDTLKNLA EDIGEELDRQ
201: VPLMDEIDRK VDKANTELRK TNVRLKEIVN QIRSTRNFTV DIILICIILG IGAYLYNVLA Q

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.