Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G187300.1 | Wheat | cytosol, plastid | 83.28 | 91.57 |
| TraesCS5D01G194900.1 | Wheat | cytosol | 82.23 | 91.12 |
| KXG35475 | Sorghum | cytosol, plastid | 64.11 | 69.7 |
| Os09t0359700-00 | Rice | cytosol | 51.92 | 68.66 |
| Zm00001d020187_P001 | Maize | cytosol, plastid | 55.75 | 65.84 |
| HORVU1Hr1G084160.1 | Barley | cytosol | 53.66 | 57.04 |
| VIT_06s0004g03090.t01 | Wine grape | cytosol | 52.26 | 56.82 |
| KRH26397 | Soybean | cytosol | 51.92 | 56.23 |
| KRH22921 | Soybean | cytosol | 51.22 | 55.47 |
| AT3G45280.3 | Thale cress | cytosol | 51.57 | 55.43 |
| Bra038292.1-P | Field mustard | cytosol | 50.87 | 55.3 |
| PGSC0003DMT400020948 | Potato | cytosol, plastid | 50.52 | 55.13 |
| Solyc11g069230.1.1 | Tomato | cytosol | 50.17 | 54.75 |
| CDX86012 | Canola | cytosol | 32.4 | 49.47 |
| CDY53837 | Canola | cytosol | 48.78 | 48.28 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G056780.4 | EnsemblPlantsGene:HORVU5Hr1G056780 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000727 |
| InterPro:T_SNARE_dom | ncoils:Coil | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF129 | PFscan:PS50192 | SEG:seg |
| SUPFAM:SSF58038 | TMHMM:TMhelix | UniParc:UPI000B48505A | UniProt:A0A287RBH6 | MapMan:13.4.2.3.3 | MapMan:22.7.4.3 |
Description
No Description!
Coordinates
chrchr5H:+:444546594..444548835
Molecular Weight (calculated)
32194.5 Da
IEP (calculated)
5.349
GRAVY (calculated)
-0.397
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: DVLTRVDAIC KKYERYDADK HRNDAADPFS RLYADMDAVI DEAIEKSERA ARETNRAAAV TLNAGVRRTK VQLAEDVVKL QKLVGKKMKG VSREEMALRP
101: DLVSALQQRI QSIPDGGGAA DQNGAGNARP GLKFDSSVAA ETLDEGYFQT SEESEAFRKE YEMRRIKQDE GLDFISEGLD TLKNLAEDMG EELDRQVPLM
201: DEIDRKVLMF YSCKKCFVAL LCIAGAKRTC TNYLLQVDKA NTELRKTNVR LKETVNQFRS TTNFTVDIIL ICIILGIGAY LYNVLAK
101: DLVSALQQRI QSIPDGGGAA DQNGAGNARP GLKFDSSVAA ETLDEGYFQT SEESEAFRKE YEMRRIKQDE GLDFISEGLD TLKNLAEDMG EELDRQVPLM
201: DEIDRKVLMF YSCKKCFVAL LCIAGAKRTC TNYLLQVDKA NTELRKTNVR LKETVNQFRS TTNFTVDIIL ICIILGIGAY LYNVLAK
001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK
Arabidopsis Description
SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.