Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020187_P001 | Maize | cytosol, plastid | 72.73 | 79.01 |
| TraesCS5B01G187300.1 | Wheat | cytosol, plastid | 71.59 | 72.41 |
| TraesCS5D01G194900.1 | Wheat | cytosol | 70.08 | 71.43 |
| Os09t0359700-00 | Rice | cytosol | 57.95 | 70.51 |
| HORVU5Hr1G056780.4 | Barley | cytosol | 69.7 | 64.11 |
| EES18638 | Sorghum | cytosol | 60.98 | 59.41 |
| VIT_06s0004g03090.t01 | Wine grape | cytosol | 57.95 | 57.95 |
| KRH26397 | Soybean | cytosol | 57.95 | 57.74 |
| KRH22921 | Soybean | cytosol | 57.2 | 56.98 |
| PGSC0003DMT400020948 | Potato | cytosol, plastid | 56.44 | 56.65 |
| Bra038292.1-P | Field mustard | cytosol | 56.44 | 56.44 |
| Solyc11g069230.1.1 | Tomato | cytosol | 56.06 | 56.27 |
| AT3G45280.3 | Thale cress | cytosol | 56.82 | 56.18 |
| CDX86012 | Canola | cytosol | 35.61 | 50.0 |
| CDY53837 | Canola | cytosol | 54.17 | 49.31 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:13.4.2.3.3 | MapMan:22.7.4.3 | UniProt:A0A1B6QC32 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0061025 | InterPro:IPR000727 | EnsemblPlants:KXG35475 | ProteinID:KXG35475 | ProteinID:KXG35475.1 |
| PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF129 | SMART:SM00397 |
| EnsemblPlantsGene:SORBI_3002G178900 | SUPFAM:SSF58038 | InterPro:Syntaxin/epimorphin_CS | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI00081AB5EA |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:56010826..56013184
Molecular Weight (calculated)
30055.7 Da
IEP (calculated)
6.004
GRAVY (calculated)
-0.598
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMIDVLTRL DAICKKYDRY DADKHRNDGD PFSRLYATVD AEIDAAIEKS ARAANEKNRA ASVTLNADVR RTKARLLEEV VKLQKIAAKK VKGLSPEEKA
101: LRADLVAALP HRIHQAIPDP DSHDGGATHQ GAGWNARPGI KLDDYSAERL EEGYFHATEE SEQFRREYEM RRIKQDEGLD FISQGLETLK NLAEDMNEEL
201: DRQVPLMDEI DTKVDKANLE IRKTNVRLKQ TVNQFRSTRN FTIDIILICI ILGIATYLYN ILSQ
101: LRADLVAALP HRIHQAIPDP DSHDGGATHQ GAGWNARPGI KLDDYSAERL EEGYFHATEE SEQFRREYEM RRIKQDEGLD FISQGLETLK NLAEDMNEEL
201: DRQVPLMDEI DTKVDKANLE IRKTNVRLKQ TVNQFRSTRN FTIDIILICI ILGIATYLYN ILSQ
001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK
Arabidopsis Description
SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.