Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G187300.1 | Wheat | cytosol, plastid | 98.07 | 97.32 |
| HORVU5Hr1G056780.4 | Barley | cytosol | 91.12 | 82.23 |
| KXG35475 | Sorghum | cytosol, plastid | 71.43 | 70.08 |
| Os09t0359700-00 | Rice | cytosol | 58.3 | 69.59 |
| Zm00001d020187_P001 | Maize | cytosol, plastid | 61.0 | 65.02 |
| TraesCS1D01G387200.1 | Wheat | cytosol | 59.07 | 56.67 |
| VIT_06s0004g03090.t01 | Wine grape | cytosol | 56.37 | 55.3 |
| PGSC0003DMT400020948 | Potato | cytosol, plastid | 55.98 | 55.13 |
| KRH26397 | Soybean | cytosol | 56.37 | 55.09 |
| Solyc11g069230.1.1 | Tomato | cytosol | 55.6 | 54.75 |
| KRH22921 | Soybean | cytosol | 55.6 | 54.34 |
| AT3G45280.3 | Thale cress | cytosol | 55.21 | 53.56 |
| Bra038292.1-P | Field mustard | cytosol | 54.44 | 53.41 |
| CDX86012 | Canola | cytosol | 35.52 | 48.94 |
| CDY53837 | Canola | cytosol | 52.12 | 46.55 |
| TraesCS1D01G190400.1 | Wheat | cytosol | 35.52 | 39.15 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G194900.1 | EnsemblPlantsGene:TraesCS5D01G194900 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom | ncoils:Coil |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF129 | PFAM:PF05739 | PFscan:PS50192 | SEG:seg | SUPFAM:SSF58038 |
| TIGR:cd15841 | TMHMM:TMhelix | MapMan:13.4.2.3.3 | MapMan:22.7.4.3 | : | : |
Description
No Description!
Coordinates
chr5D:+:298759035..298761048
Molecular Weight (calculated)
28986.6 Da
IEP (calculated)
5.023
GRAVY (calculated)
-0.446
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MIDVLTRVDA ICKNYERYDA DKHRNDAADP FSRLYADMDA VIDEAIEKSE RAARETNRAA AVTLNAGVRR TKARLLEEVA KLQKLAGKKM KGVSREEMAL
101: RPDLVSALHQ RIQSIPDGGG AADQNGGGNA RPGIKFDSSV AAETLDEGYF QTSEESEAFR MEFEMRRIKQ VEGLDLISEG LNTLKNLAED IGEELDRQVP
201: IMDEIDRKVD KANTELRKTN VRLKEIVNQI RSTRNFTVDI ILICIILGIG AYLYNVLAQ
101: RPDLVSALHQ RIQSIPDGGG AADQNGGGNA RPGIKFDSSV AAETLDEGYF QTSEESEAFR MEFEMRRIKQ VEGLDLISEG LNTLKNLAED IGEELDRQVP
201: IMDEIDRKVD KANTELRKTN VRLKEIVNQI RSTRNFTVDI ILICIILGIG AYLYNVLAQ
001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK
Arabidopsis Description
SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.