Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- golgi 1
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g069230.1.1 | Tomato | cytosol | 91.64 | 91.64 |
| VIT_06s0004g03090.t01 | Wine grape | cytosol | 65.78 | 65.53 |
| PGSC0003DMT400027162 | Potato | cytosol | 64.26 | 63.77 |
| Bra038292.1-P | Field mustard | cytosol | 62.36 | 62.12 |
| AT3G45280.3 | Thale cress | cytosol | 62.36 | 61.42 |
| KRH22921 | Soybean | cytosol | 60.84 | 60.38 |
| KRH26397 | Soybean | cytosol | 60.84 | 60.38 |
| TraesCS5B01G187300.1 | Wheat | cytosol, plastid | 57.03 | 57.47 |
| KXG35475 | Sorghum | cytosol, plastid | 56.65 | 56.44 |
| Os09t0359700-00 | Rice | cytosol | 46.39 | 56.22 |
| TraesCS5D01G194900.1 | Wheat | cytosol | 55.13 | 55.98 |
| CDY53837 | Canola | cytosol | 61.22 | 55.52 |
| CDX86012 | Canola | cytosol | 38.78 | 54.26 |
| Zm00001d020187_P001 | Maize | cytosol, plastid | 49.05 | 53.09 |
| HORVU5Hr1G056780.4 | Barley | cytosol | 55.13 | 50.52 |
| PGSC0003DMT400093449 | Potato | cytosol | 14.45 | 45.24 |
Protein Annotations
| Gene3D:1.20.5.110 | EntrezGene:102603109 | MapMan:13.4.2.3.3 | MapMan:22.7.4.3 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000727 | UniProt:M1AEC6 | PFAM:PF05739 | EnsemblPlantsGene:PGSC0003DMG400008111 |
| PGSC:PGSC0003DMG400008111 | EnsemblPlants:PGSC0003DMT400020948 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF129 | SMART:SM00397 |
| SUPFAM:SSF58038 | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI000295BBD8 | RefSeq:XP_006340148.2 | SEG:seg |
Description
Syntaxin-71 [Source:PGSC_GENE;Acc:PGSC0003DMG400008111]
Coordinates
chr11:+:41159070..41162712
Molecular Weight (calculated)
29833.7 Da
IEP (calculated)
6.321
GRAVY (calculated)
-0.566
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVIDIIFRV DSICKKYEKY DVDKHAANDS SGDAFARLYS SFESQIDATS EKAEMAAMET NRAKAVAMKA EVRRTKARLM DEIKKLHKLA QKKVKGLSQE
101: GLETRGDLVL MLSERIQAIP DGSTDAAKTT GGRGTSSFNK NIKFDSEGQF NEGFYEQTEE GTHFRSEYEM RKMKQDEGLD VISEGLDTLK NLARDMNEEL
201: DRQVPLMDEI NTKVDKATTD IKNNNVRLKD NINKIRSSKN FFIDIILICI LLGIMAYLYN VLK
101: GLETRGDLVL MLSERIQAIP DGSTDAAKTT GGRGTSSFNK NIKFDSEGQF NEGFYEQTEE GTHFRSEYEM RKMKQDEGLD VISEGLDTLK NLARDMNEEL
201: DRQVPLMDEI NTKVDKATTD IKNNNVRLKD NINKIRSSKN FFIDIILICI LLGIMAYLYN VLK
001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK
Arabidopsis Description
SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.