Factsheet for PGSC0003DMT400027162

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g084210.1.1	Tomato	nucleus	98.87	98.87
VIT_08s0040g02130.t01	Wine grape	cytosol	88.68	88.68
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	82.64	82.02
GSMUA_Achr9P00150_001	Banana	cytosol	80.38	80.08
GSMUA_Achr5P09270_001	Banana	plasma membrane	76.6	77.78
Zm00001d038931_P002	Maize	plasma membrane	76.23	74.81
EES18638	Sorghum	cytosol	75.85	74.17
Os05t0553700-01	Rice	plasma membrane	73.96	73.13
TraesCS1A01G379800.1	Wheat	cytosol	73.96	72.59
TraesCS1B01G401800.1	Wheat	cytosol	73.96	72.59
TraesCS1D01G387200.1	Wheat	cytosol	73.58	72.22
HORVU1Hr1G084160.1	Barley	cytosol	73.21	71.85
PGSC0003DMT400020948	Potato	cytosol, plastid	63.77	64.26
PGSC0003DMT400093449	Potato	cytosol	19.25	60.71
TraesCS1D01G190400.1	Wheat	cytosol	47.92	54.04

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:102580450	MapMan:13.4.2.3.3	MapMan:22.7.4.3	ncoils:Coil	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0061025	InterPro:IPR000727	UniProt:M1APB0	PFAM:PF05739	EnsemblPlantsGene:PGSC0003DMG402010480
PGSC:PGSC0003DMG402010480	EnsemblPlants:PGSC0003DMT400027162	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF129
SMART:SM00397	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000295EB57
RefSeq:XP_006339067.1	SEG:seg	:	:	:	:

Description

Syntaxin [Source:PGSC_GENE;Acc:PGSC0003DMG402010480]

Coordinates

chr10:+:54873023..54878500

Molecular Weight (calculated)

29822.4 Da

IEP (calculated)

5.130

GRAVY (calculated)

-0.534

Length

265 amino acids

Sequence
(BLAST)

001: MSVIDILTRV DSICKKYDKY DIDKQKDSNV AGDDAFARLY SSVESDIETA LQKAETASNE KNRASVVAIN AEIRRTKARL LEEVPKLQRL AVRKVKGLSG
101: EELAARNDLV LALPDRINAI PDGSAAPPKQ SGGWRASGSR TEIKFDSDGQ FDNEYFQQTE ESSQFKQEYE MRKMRQDQGL DVIAEGLDTL KNMASDMNEE
201: LDRQVPLMDE IDAKVDRATA DLKNTNVRLK HTVNQLRSSR NFCIDIILLC IILGIAAYLY NVLKK

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.