Factsheet for Zm00001d038931_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23353019
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18638	Sorghum	cytosol	98.89	98.52
HORVU1Hr1G084160.1	Barley	cytosol	90.0	90.0
TraesCS1B01G401800.1	Wheat	cytosol	89.63	89.63
Os05t0553700-01	Rice	plasma membrane	88.89	89.55
TraesCS1A01G379800.1	Wheat	cytosol	89.26	89.26
TraesCS1D01G387200.1	Wheat	cytosol	88.89	88.89
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	77.04	77.9
VIT_08s0040g02130.t01	Wine grape	cytosol	75.56	76.98
Solyc10g084210.1.1	Tomato	nucleus	74.81	76.23
PGSC0003DMT400027162	Potato	cytosol	74.81	76.23
GSMUA_Achr9P00150_001	Banana	cytosol	74.07	75.19
KRH32439	Soybean	cytosol, plastid	73.7	75.09
KRH19848	Soybean	cytosol	72.96	74.34
GSMUA_Achr5P09270_001	Banana	plasma membrane	71.85	74.33
KRG95962	Soybean	mitochondrion	71.48	72.83
KRH67670	Soybean	endoplasmic reticulum	70.74	72.08
AT3G09740.1	Thale cress	cytosol	68.15	69.17
Bra034085.1-P	Field mustard	cytosol	66.67	68.7
CDY22202	Canola	cytosol	66.67	67.92
CDY44726	Canola	cytosol	67.04	67.54
Bra029785.1-P	Field mustard	cytosol	67.04	67.54
CDY41590	Canola	cytosol	66.3	67.29
CDY41311	Canola	cytosol	65.93	67.17
TraesCS1D01G190400.1	Wheat	cytosol	53.7	61.7
Bra014333.1-P	Field mustard	cytosol	22.22	58.25
CDY40392	Canola	cytosol	22.22	58.25
Zm00001d020187_P001	Maize	cytosol, plastid	48.15	53.5
PGSC0003DMT400093449	Potato	cytosol	14.81	47.62
CDY39898	Canola	cytosol	21.48	44.62
CDY50077	Canola	cytosol	30.74	43.01
Bra027876.1-P	Field mustard	cytosol	22.96	40.79
CDX86009	Canola	plastid	22.22	37.5

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.3	MapMan:22.7.4.3	UniProt:A0A1D6MBX4	ProteinID:AQK88260.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006612	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0009506	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0061025	InterPro:IPR000727	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF204	SMART:SM00397	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI000220F632	EnsemblPlantsGene:Zm00001d038931	EnsemblPlants:Zm00001d038931_P002	EnsemblPlants:Zm00001d038931_T002	:

Description

Syntaxin-72

Coordinates

chr6:+:167229386..167236425

Molecular Weight (calculated)

30178.9 Da

IEP (calculated)

4.918

GRAVY (calculated)

-0.515

Length

270 amino acids

Sequence
(BLAST)

001: MTVIDILTRV DAICQKYDKY DVDKLNGANV AGDDPFARLY ASVDADINQC VDKAETAKQE KNRAAVVALN AEIRRTKAKL LEEDLPKLQR LAVKKVKGLT
101: REEIATRSDL VAALPDRIQS IPDGSSTATK KNGSWGASGS RTGGAIKFDS TADGNFDDEY FKGTEESNQF RREYEMRRMK QDEGLDVIGE GLETLKNMAS
201: DMNEELDRQV PLMDEMDDKV DRANADLKNT NVRLKETVLQ LRSSRNFCID IILLCVILGI AAYLYNVLKK

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.