Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034085.1-P | Field mustard | cytosol | 94.74 | 96.18 |
| CDY22202 | Canola | cytosol | 93.98 | 94.34 |
| CDY41311 | Canola | cytosol | 93.98 | 94.34 |
| Bra029785.1-P | Field mustard | cytosol | 94.74 | 94.03 |
| CDY44726 | Canola | cytosol | 94.74 | 94.03 |
| CDY41590 | Canola | cytosol | 92.86 | 92.86 |
| Bra014333.1-P | Field mustard | cytosol | 31.95 | 82.52 |
| CDY40392 | Canola | cytosol | 31.95 | 82.52 |
| VIT_08s0040g02130.t01 | Wine grape | cytosol | 78.57 | 78.87 |
| Solyc10g084210.1.1 | Tomato | nucleus | 77.44 | 77.74 |
| KRH32439 | Soybean | cytosol, plastid | 77.44 | 77.74 |
| KRH19848 | Soybean | cytosol | 77.07 | 77.36 |
| GSMUA_Achr6P22560_001 | Banana | cytosol, plastid | 76.69 | 76.4 |
| GSMUA_Achr9P00150_001 | Banana | cytosol | 75.94 | 75.94 |
| KRG95962 | Soybean | mitochondrion | 75.19 | 75.47 |
| KRH67670 | Soybean | endoplasmic reticulum | 73.68 | 73.96 |
| GSMUA_Achr5P09270_001 | Banana | plasma membrane | 72.56 | 73.95 |
| Os05t0553700-01 | Rice | plasma membrane | 68.8 | 68.28 |
| EES18638 | Sorghum | cytosol | 69.55 | 68.27 |
| Zm00001d038931_P002 | Maize | plasma membrane | 69.17 | 68.15 |
| HORVU1Hr1G084160.1 | Barley | cytosol | 67.67 | 66.67 |
| TraesCS1B01G401800.1 | Wheat | cytosol | 67.67 | 66.67 |
| TraesCS1A01G379800.1 | Wheat | cytosol | 67.67 | 66.67 |
| TraesCS1D01G387200.1 | Wheat | cytosol | 67.29 | 66.3 |
| AT3G45280.3 | Thale cress | cytosol | 65.41 | 65.17 |
| AT3G61450.2 | Thale cress | cytosol, plastid | 64.29 | 64.77 |
| PGSC0003DMT400093449 | Potato | cytosol | 16.54 | 52.38 |
| TraesCS1D01G190400.1 | Wheat | cytosol | 44.36 | 50.21 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:13.4.2.3.3 | MapMan:22.7.4.3 | EntrezGene:820132 | UniProt:A0A178VCY7 | ProteinID:AAF23303.1 |
| ProteinID:AEE74807.1 | EMBL:AF355757 | ArrayExpress:AT3G09740 | EnsemblPlantsGene:AT3G09740 | RefSeq:AT3G09740 | TAIR:AT3G09740 |
| RefSeq:AT3G09740-TAIR-G | EnsemblPlants:AT3G09740.1 | TAIR:AT3G09740.1 | EMBL:AY090358 | Unigene:At.20899 | EMBL:BT024483 |
| ncoils:Coil | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005886 | GO:GO:0006612 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006906 | GO:GO:0008150 |
| GO:GO:0008565 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0031201 | GO:GO:0048278 | GO:GO:0061025 | InterPro:IPR000727 | RefSeq:NP_566354.1 |
| ProteinID:OAP03225.1 | PFAM:PF05739 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00914 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF208 | UniProt:Q2HIU8 | UniProt:Q9SF29 | SMART:SM00397 | SUPFAM:SSF58038 |
| Symbol:SYP71 | InterPro:Syntaxin/epimorphin_CS | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI00001362EE | SEG:seg |
Description
SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
Coordinates
chr3:+:2989356..2991664
Molecular Weight (calculated)
29984.6 Da
IEP (calculated)
4.828
GRAVY (calculated)
-0.515
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.