CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32439	Soybean	cytosol, plastid	98.87	98.87
KRG95962	Soybean	mitochondrion	90.57	90.57
KRH67670	Soybean	endoplasmic reticulum	88.3	88.3
VIT_08s0040g02130.t01	Wine grape	cytosol	86.04	86.04
Solyc10g084210.1.1	Tomato	nucleus	82.64	82.64
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	82.26	81.65
GSMUA_Achr9P00150_001	Banana	cytosol	78.87	78.57
AT3G09740.1	Thale cress	cytosol	77.36	77.07
GSMUA_Achr5P09270_001	Banana	plasma membrane	75.85	77.01
Zm00001d038931_P002	Maize	plasma membrane	74.34	72.96
Os05t0553700-01	Rice	plasma membrane	73.21	72.39
EES18638	Sorghum	cytosol	73.96	72.32
TraesCS1A01G379800.1	Wheat	cytosol	73.21	71.85
TraesCS1B01G401800.1	Wheat	cytosol	73.21	71.85
HORVU1Hr1G084160.1	Barley	cytosol	72.83	71.48
TraesCS1D01G387200.1	Wheat	cytosol	72.83	71.48
KRH26397	Soybean	cytosol	66.04	66.04
KRH22921	Soybean	cytosol	66.04	66.04
PGSC0003DMT400093449	Potato	cytosol	19.62	61.9
TraesCS1D01G190400.1	Wheat	cytosol	46.42	52.34
CDY39898	Canola	cytosol	24.91	50.77
CDY50077	Canola	cytosol	36.23	49.74
Bra027876.1-P	Field mustard	cytosol	26.79	46.71
CDX86009	Canola	plastid	27.17	45.0

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100786529	MapMan:13.4.2.3.3	MapMan:22.7.4.3	EMBL:ACUP02008210	EnsemblPlantsGene:GLYMA_13G138900
GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006906
GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0031201	GO:GO:0048278	UniProt:I1LZ35	InterPro:IPR000727	ProteinID:KRH19847.1	EnsemblPlants:KRH19848
ProteinID:KRH19848	ProteinID:KRH19848.1	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF129	SMART:SM00397	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI000233AC57	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:25135450..25139344

Molecular Weight (calculated)

29778.5 Da

IEP (calculated)

5.959

GRAVY (calculated)

-0.463

Length

265 amino acids

Sequence
(BLAST)

001: MSVIDILTRV DSICKKYDKY DVEKHRDANV SGDDAFARLY ASVDADIVAL LQKAESASKE KGKASAVAIN AEIRRTKARL LEEVPKLQRL AVKKVKGLSS
101: QEFAARNDLV LALPDRIQAI PDGAPPVPKQ TGGWAASASR PEIKFDSDGR FDDEYFQQSE QSSQFRQEYE MRRMKQDQGL DVIAEGLDTL KNMAHDMNEE
201: LDRQVPLMDE IDTKVDKASS DLKNTNVRLK DTVNQLRSSR NFCIDIVLLI IILGIAAYLY NVLKK

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.