CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26397	Soybean	cytosol	95.47	95.47
VIT_06s0004g03090.t01	Wine grape	cytosol	68.68	68.94
KRH32439	Soybean	cytosol, plastid	66.04	66.04
KRH19848	Soybean	cytosol	66.04	66.04
AT3G45280.3	Thale cress	cytosol	64.53	64.04
KRG95962	Soybean	mitochondrion	63.77	63.77
Bra038292.1-P	Field mustard	cytosol	63.4	63.64
KRH67670	Soybean	endoplasmic reticulum	63.02	63.02
PGSC0003DMT400020948	Potato	cytosol, plastid	60.38	60.84
Os09t0359700-00	Rice	cytosol	49.43	60.37
Solyc11g069230.1.1	Tomato	cytosol	58.11	58.56
CDX86012	Canola	cytosol	40.75	57.45
KXG35475	Sorghum	cytosol, plastid	56.98	57.2
TraesCS5B01G187300.1	Wheat	cytosol, plastid	56.23	57.09
CDY53837	Canola	cytosol	61.13	55.86
TraesCS5D01G194900.1	Wheat	cytosol	54.34	55.6
Zm00001d020187_P001	Maize	cytosol, plastid	47.92	52.26
HORVU5Hr1G056780.4	Barley	cytosol	55.47	51.22

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100817729	MapMan:13.4.2.3.3	MapMan:22.7.4.3	UniProt:A0A0R0H6G9	EMBL:ACUP02008441
EnsemblPlantsGene:GLYMA_13G327700	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0031201	GO:GO:0048278	GO:GO:0061025	InterPro:IPR000727	EnsemblPlants:KRH22921
ProteinID:KRH22921	ProteinID:KRH22921.1	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF208	SMART:SM00397	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI0003DE9FF4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:42229990..42232844

Molecular Weight (calculated)

30151.0 Da

IEP (calculated)

5.477

GRAVY (calculated)

-0.460

Length

265 amino acids

Sequence
(BLAST)

001: MSVIDILFRV DDICHKYEKY DIDKQRELNA YGDDLFARLY AAVDSSIQSA LNKSEVASTE KNRASAAALN AEVRRTKGRL MDELPKLRKL MHKKVKGLTK
101: EDMAVRQDLV LALPERIQAI PDGISGAAVQ TAGWTATSSQ PHIKFDSSEG HLSSDYFQQS EESSQFRQEY EMRRTKQDEG LDIISEGLDT LKDLAHEMNE
201: EIDRQVPLMD EIDTKVDRAA ADVRNTNVRL KKTLTEIRSS RNFCIDIVLL CVLLGIFLYL YNAMR

Best Arabidopsis Sequence Match ( AT3G45280.1 )
(BLAST)

001: MPVIDIIFRV DEICKKYDKY DIDKHREIGA SGDDAFSRLF TSIDSDIEAV LRKAELASTE KNRAAAVAMN AEVRRTKARL AEDVVKLQKL AVKKIKGLTR
101: EERESRCDLV IALADRLQAI PDGNEHGAKQ ANSDWGGASA PNKNIKFDMS EEDMDDGFFQ QSEESSQFRQ EYEMRRKKQD EGLDIISEGL DALKNLARDM
201: NEELDKQVPL MEEMETKVDG ATSDLKNTNV RLKKQLVQMR SSRNFCIDII LLCVILGIVS YIYNALN

Arabidopsis Description

SYP72SYP72 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.