Factsheet for TraesCS1D01G190400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G387200.1	Wheat	cytosol	68.09	59.26
Os05t0553700-01	Rice	plasma membrane	61.28	53.73
Zm00001d038931_P002	Maize	plasma membrane	61.7	53.7
EES18638	Sorghum	cytosol	61.7	53.51
PGSC0003DMT400027162	Potato	cytosol	54.04	47.92
Solyc10g084210.1.1	Tomato	nucleus	53.62	47.55
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	53.19	46.82
GSMUA_Achr5P09270_001	Banana	plasma membrane	51.91	46.74
GSMUA_Achr9P00150_001	Banana	cytosol	52.77	46.62
Bra014333.1-P	Field mustard	cytosol	20.43	46.6
CDY40392	Canola	cytosol	20.43	46.6
KRH19848	Soybean	cytosol	52.34	46.42
VIT_08s0040g02130.t01	Wine grape	cytosol	52.34	46.42
KRH32439	Soybean	cytosol, plastid	52.34	46.42
Bra034085.1-P	Field mustard	cytosol	50.64	45.42
KRG95962	Soybean	mitochondrion	51.06	45.28
CDY22202	Canola	cytosol	50.64	44.91
CDY41311	Canola	cytosol	50.21	44.53
AT3G09740.1	Thale cress	cytosol	50.21	44.36
KRH67670	Soybean	endoplasmic reticulum	49.36	43.77
CDY44726	Canola	cytosol	49.79	43.66
Bra029785.1-P	Field mustard	cytosol	49.79	43.66
CDY41590	Canola	cytosol	49.36	43.61
TraesCS5D01G194900.1	Wheat	cytosol	39.15	35.52
CDY50077	Canola	cytosol	20.85	25.39
CDY39898	Canola	cytosol	13.62	24.62
Bra027876.1-P	Field mustard	cytosol	15.74	24.34
PGSC0003DMT400093449	Potato	cytosol	7.66	21.43
CDX86009	Canola	plastid	14.04	20.62

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.3	MapMan:22.7.4.3	ncoils:Coil	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	InterPro:IPR000727	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF204	SMART:SM00397	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	InterPro:T_SNARE_dom
EnsemblPlantsGene:TraesCS1D01G190400	EnsemblPlants:TraesCS1D01G190400.1	TIGR:cd15841	SEG:seg	:	:

Description

No Description!

Coordinates

chr1D:-:262325512..262327612

Molecular Weight (calculated)

26638.9 Da

IEP (calculated)

6.972

GRAVY (calculated)

-0.423

Length

235 amino acids

Sequence
(BLAST)

001: MTVIDILTRV DVICQKYDKY DAEKLNGANV AGEDPFARLY GSVDAEISYL LLQKAEAARQ EKNRATVVAL NTEIRRTKAS SSRRTCPSCS ASRSRSTERI
101: TKIKLVVLYK CSSSCCECIL ILRLTLFYGN FDDEYFKGTE ESNKFCQEYE MRRMKQDEGL DVIGEGLATL KNMSSDMNEE LDRQVPLMDE MDDKVDRANA
201: DLKNTNVRLK QTILQVKVHS SPCIILISPP TFTSK

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.