Factsheet for Bra034085.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41311	Canola	cytosol	98.09	96.98
AT3G09740.1	Thale cress	cytosol	96.18	94.74
Bra029785.1-P	Field mustard	cytosol	95.8	93.66
Bra014333.1-P	Field mustard	cytosol	32.44	82.52
VIT_08s0040g02130.t01	Wine grape	cytosol	79.01	78.11
Solyc10g084210.1.1	Tomato	nucleus	78.24	77.36
GSMUA_Achr6P22560_001	Banana	cytosol, plastid	76.34	74.91
GSMUA_Achr9P00150_001	Banana	cytosol	75.19	74.06
GSMUA_Achr5P09270_001	Banana	plasma membrane	72.9	73.18
Os05t0553700-01	Rice	plasma membrane	69.08	67.54
EES18638	Sorghum	cytosol	69.08	66.79
Zm00001d038931_P002	Maize	plasma membrane	68.7	66.67
TraesCS1A01G379800.1	Wheat	cytosol	67.94	65.93
TraesCS1B01G401800.1	Wheat	cytosol	67.94	65.93
HORVU1Hr1G084160.1	Barley	cytosol	67.56	65.56
TraesCS1D01G387200.1	Wheat	cytosol	67.56	65.56
Bra038292.1-P	Field mustard	cytosol	64.12	63.64
Bra027876.1-P	Field mustard	cytosol	35.88	61.84
Bra007605.1-P	Field mustard	cytosol, plastid	50.0	51.98
TraesCS1D01G190400.1	Wheat	cytosol	45.42	50.64

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.3	MapMan:22.7.4.3	EnsemblPlantsGene:Bra034085	EnsemblPlants:Bra034085.1	EnsemblPlants:Bra034085.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0061025	InterPro:IPR000727	UniProt:M4EZ42
PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF208	SMART:SM00397
SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00025441BA	:

Description

AT3G09740 (E=4e-140) SYP71, ATSYP71 | SYP71 (SYNTAXIN OF PLANTS 71); protein transporter

Coordinates

chrA01:-:27538433..27539924

Molecular Weight (calculated)

29506.0 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.519

Length

262 amino acids

Sequence
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANV SGDDAFARLY GAFETQIETA LEKAELVTKE KNRASAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKA TSAWAPSTAS RPDIKFDSDG RFDDDYFQES HESSQFRQEY EMRKIKQEQG LDMISEGLDA LKNMASDMNE
201: ELDRQVPLMD EIDSKVDRAT SDLKNTNVRL KDTVNQLRSS RNFCIDIVLL CIVLGIAAYL YK

Best Arabidopsis Sequence Match ( AT3G09740.1 )
(BLAST)

001: MTVIDILTRV DSICKKYDKY DVDKQREANI SGDDAFARLY GAFETQIETA LEKAELVTKE KNRAAAVAMN AEIRRTKARL SEEVPKLQRL AVKRVKGLTT
101: EELAARNDLV LALPARIEAI PDGTAGGPKS TSAWTPSSTT SRPDIKFDSD GRFDDDYFQE SNESSQFRQE YEMRKIKQEQ GLDMISEGLD ALKNMASDMN
201: EELDRQVPLM DEIDTKVDRA TSDLKNTNVR LKDTVNQLRS SRNFCIDIVL LCIVLGIAAY LYNVLK

Arabidopsis Description

SYP71At3g09740 [Source:UniProtKB/TrEMBL;Acc:Q2HIU8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.