Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71736 | Canola | cytosol | 81.06 | 80.15 |
| CDY48918 | Canola | cytosol, plastid | 81.82 | 80.0 |
| Bra007605.1-P | Field mustard | cytosol, plastid | 63.64 | 66.67 |
| AT3G09740.1 | Thale cress | cytosol | 64.77 | 64.29 |
| AT3G45280.3 | Thale cress | cytosol | 55.3 | 54.68 |
| VIT_15s0046g01850.t01 | Wine grape | cytosol | 29.17 | 44.77 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:13.4.2.3.3 | MapMan:22.7.4.3 | EntrezGene:825318 | ProteinID:AEE80207.1 | ProteinID:ANM64508.1 |
| ArrayExpress:AT3G61450 | EnsemblPlantsGene:AT3G61450 | RefSeq:AT3G61450 | TAIR:AT3G61450 | RefSeq:AT3G61450-TAIR-G | EnsemblPlants:AT3G61450.2 |
| TAIR:AT3G61450.2 | Unigene:At.19040 | UniProt:F4JEA3 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008565 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0061025 | InterPro:IPR000727 | RefSeq:NP_001190153.1 | RefSeq:NP_001326529.1 | PFAM:PF05739 |
| PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009009 | PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00914 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF129 | SMART:SM00397 | SUPFAM:SSF58038 | Symbol:SYP73 |
| InterPro:Syntaxin/epimorphin_CS | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0001E92E94 | SEG:seg | : |
Description
SYP73Syntaxin of plants 73 [Source:UniProtKB/TrEMBL;Acc:F4JEA3]
Coordinates
chr3:+:22738353..22740112
Molecular Weight (calculated)
29892.5 Da
IEP (calculated)
4.828
GRAVY (calculated)
-0.500
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVIDLITRV DSICKKYEKY DINRQRDANV SGDDAFSRLY SAVEYALETV LQKTEDLSSE TNKAKAVAMN AEIRRTKARL LEGIPKLQRL SLKKVKGLSK
101: EELDARNDLV LSLRDKIEAI PESSAPVVGG WEASTSYSNI RFDTNVSDDR IGSEYFQPTG ESDQFKQEYE MKRIKQDQGL DYIAEGLDTL KNMAQDINEE
201: LDRQEPLMDE IDTKIDKAAT DLKSTNVRLK DTVTKLRSSR NFCIDIILLC ILLGIAAFIY NSVK
101: EELDARNDLV LSLRDKIEAI PESSAPVVGG WEASTSYSNI RFDTNVSDDR IGSEYFQPTG ESDQFKQEYE MKRIKQDQGL DYIAEGLDTL KNMAQDINEE
201: LDRQEPLMDE IDTKIDKAAT DLKSTNVRLK DTVTKLRSSR NFCIDIILLC ILLGIAAFIY NSVK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.