CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48918	Canola	cytosol, plastid	90.64	89.63
AT3G61450.2	Thale cress	cytosol, plastid	80.15	81.06
Bra007605.1-P	Field mustard	cytosol, plastid	70.79	75.0
CDY41590	Canola	cytosol	63.3	63.53
CDY44726	Canola	cytosol	63.67	63.43
CDY22202	Canola	cytosol	62.17	62.64
CDY41311	Canola	cytosol	62.17	62.64
CDY40392	Canola	cytosol	22.85	59.22
CDX86012	Canola	cytosol	35.21	50.0
CDY53837	Canola	cytosol	54.31	50.0
CDX86011	Canola	cytosol	14.23	48.1
CDY39898	Canola	cytosol	20.22	41.54
CDY50077	Canola	cytosol	28.84	39.9
CDX86009	Canola	plastid	20.22	33.75

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.3	MapMan:22.7.4.3	GO:A0A078C411	EnsemblPlants:CDX71736	ProteinID:CDX71736
ProteinID:CDX71736.1	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0061025	EnsemblPlantsGene:GSBRNA2T00155431001	InterPro:IPR000727	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF129	SMART:SM00397	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI0004EF0A5D	SEG:seg	:	:	:

Description

BnaC08g31380D

Coordinates

chrLK031795:-:238583..240108

Molecular Weight (calculated)

30292.0 Da

IEP (calculated)

5.027

GRAVY (calculated)

-0.503

Length

267 amino acids

Sequence
(BLAST)

001: MGLVDLITRV DSICKKYEKY DLVKQREEAN ISGDDAFSRL YSSFESALET LLQKTEEFSS ETNRAKAVAM NAEIRRTKAR LLEGVPKLQR LALKKVKGLS
101: QEELDGRHEL VLSLRDKIEA VQDGSAPGNG WAASTSYTNI RFDTNVSDGR VNSEYFQRTE ESGQFKQEYE LRRMKQASLC LQDQGLDFIA EGLDTLKNMA
201: QDINEELDRQ EPLVDEIDTK IDKASTDLKS TNVRLKDTVT KLRSSRNFCI DIILLCILLG IAAFIYK

Best Arabidopsis Sequence Match ( AT3G61450.6 )
(BLAST)

001: MGVIDLITRV DSICKKYEKY DINRQRDANV SGDDAFSRLY SAVEYALETV LQKTEDLSSE TNKAKAVAMN AEIRRTKARL LEGIPKLQRL SLKKVKGLSK
101: EELDARNDLV LSLRDKIEAI PESSAPVVGG WEASTSYSNI RFDTNVSDDR IGSEYFQPTG ESDQFKQEYE MKRIKQDQGL DYIAEGLDTL KNMAQDINEE
201: LDRQEPLMDE IDTKIDKAAT DLKSTNVRLK DTVTKLRSSR NFCIDIILLC ILLGIAAFIY K

Arabidopsis Description

SYP73Syntaxin of plants 73 [Source:UniProtKB/TrEMBL;Acc:F4JEA3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.