CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49095	Canola	mitochondrion	89.3	98.64
CDX81630	Canola	cytosol	74.07	98.36
CDX84036	Canola	cytosol, mitochondrion	88.89	98.18
AT1G14320.1	Thale cress	mitochondrion	88.89	98.18
CDX96861	Canola	cytosol	88.48	97.73
CDY62060	Canola	mitochondrion	86.42	95.02
CDY38756	Canola	mitochondrion	85.6	94.55
CDY28582	Canola	cytosol, mitochondrion	85.6	94.12
CDY44087	Canola	cytosol, mitochondrion	85.6	94.12
CDY48394	Canola	cytosol	71.19	94.02
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	13.17	91.43
CDY33756	Canola	cytosol	89.71	87.55
Solyc06g082670.2.1	Tomato	plastid	76.95	85.39
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	76.95	85.39
TraesCS4A01G204800.1	Wheat	plastid	76.13	85.25
EER93866	Sorghum	cytosol	76.95	85.0
TraesCS4B01G108400.1	Wheat	golgi, unclear	75.72	84.79
Zm00001d033128_P001	Maize	plasma membrane, plastid	76.54	84.55
GSMUA_Achr10P...	Banana	cytosol	77.78	84.38
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	75.31	84.33
PGSC0003DMT400006183	Potato	cytosol	63.37	84.15
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	75.72	84.02
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	75.72	84.02
TraesCS1A01G112500.1	Wheat	nucleus	75.72	84.02
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	77.78	84.0
Os05t0169100-01	Rice	nucleus, plastid	74.49	82.65
EES06560	Sorghum	cytosol	76.13	82.59
Solyc06g007520.2.1	Tomato	nucleus, unclear	76.95	81.66
Os11t0220800-01	Rice	nucleus	74.9	81.25
Solyc06g082650.2.1	Tomato	nucleus	67.49	79.61
CDY01747	Canola	mitochondrion	86.42	79.25
GSMUA_Achr6P15860_001	Banana	mitochondrion	46.91	76.51
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	67.9	75.34
HORVU4Hr1G016190.4	Barley	extracellular, golgi	62.14	75.12
KRG98102	Soybean	mitochondrion, plastid	79.01	73.0
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	80.25	72.22
HORVU1Hr1G024710.4	Barley	mitochondrion	73.66	69.92
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	27.16	55.93

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	GO:A0A078HPJ2	UniProt:A0A078HPJ2	EnsemblPlants:CDY39324
ProteinID:CDY39324	ProteinID:CDY39324.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00067744001	InterPro:IPR036920
PFAM:PF00252	PIRSF:PIRSF005590	ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF22	InterPro:Ribosomal_L10e
InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	TIGRFAMs:TIGR00279	UniParc:UPI0004EDEE5E

Description

BnaC05g10550DBnaC05g10550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPJ2]

Coordinates

chrLK032445:-:182160..183923

Molecular Weight (calculated)

27684.2 Da

IEP (calculated)

11.171

GRAVY (calculated)

-0.415

Length

243 amino acids

Sequence
(BLAST)

001: MLQYNYPRGE QIQPLLFRLR RVAMGRRPAR CYRQIKGKPY PKSRYCRGVP DPKIRIYDVG MKKKGVDEFP FCVHLVSWEK ENVSSEALEA ARIACNKYMV
101: KSAGKDAFHL RIRVHPFHVL RINKMLSCAG ADRLQTGMRG AFGKALGTCA RVAIGQVLLS VRCKDAHGHH AQEALRRAKF KFPGRQKIIV SRKWGFTKFN
201: RADFTKLRQD KRVVPDGVNA KFLSCHGPLA LRQPGSAFLP ATY

Best Arabidopsis Sequence Match ( AT1G14320.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFL
201: SCHGPLANRQ PGSAFLPAHY

Arabidopsis Description

RPL10A60S ribosomal protein L10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VT9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.