Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48394 | Canola | cytosol | 83.26 | 100.0 |
| CDY28582 | Canola | cytosol, mitochondrion | 99.09 | 99.09 |
| CDY44087 | Canola | cytosol, mitochondrion | 99.09 | 99.09 |
| CDY38756 | Canola | mitochondrion | 97.74 | 98.18 |
| AT1G66580.1 | Thale cress | cytosol, mitochondrion | 96.38 | 96.38 |
| CDX81630 | Canola | cytosol | 78.73 | 95.08 |
| CDX84036 | Canola | cytosol, mitochondrion | 94.57 | 95.0 |
| CDX96861 | Canola | cytosol | 94.57 | 95.0 |
| CDY49095 | Canola | mitochondrion | 94.12 | 94.55 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 14.48 | 91.43 |
| CDY39324 | Canola | cytosol, mitochondrion | 95.02 | 86.42 |
| Solyc06g082670.2.1 | Tomato | plastid | 85.52 | 86.3 |
| EER93866 | Sorghum | cytosol | 85.52 | 85.91 |
| Zm00001d033128_P001 | Maize | plasma membrane, plastid | 85.07 | 85.45 |
| PGSC0003DMT400078129 | Potato | cytosol, mitochondrion | 84.62 | 85.39 |
| TraesCS4A01G204800.1 | Wheat | plastid | 83.26 | 84.79 |
| TraesCS1D01G114100.1 | Wheat | cytosol, mitochondrion | 83.71 | 84.47 |
| TraesCS1B01G132700.1 | Wheat | cytosol, mitochondrion | 83.71 | 84.47 |
| TraesCS1A01G112500.1 | Wheat | nucleus | 83.71 | 84.47 |
| TraesCS4B01G108400.1 | Wheat | golgi, unclear | 82.81 | 84.33 |
| CDY33756 | Canola | cytosol | 94.57 | 83.94 |
| TraesCS4D01G105600.1 | Wheat | cytosol, mitochondrion | 82.35 | 83.87 |
| Os05t0169100-01 | Rice | nucleus, plastid | 82.81 | 83.56 |
| GSMUA_Achr8P01550_001 | Banana | cytosol, mitochondrion | 85.07 | 83.56 |
| GSMUA_Achr10P... | Banana | cytosol | 84.62 | 83.48 |
| PGSC0003DMT400006183 | Potato | cytosol | 68.78 | 83.06 |
| EES06560 | Sorghum | cytosol | 83.26 | 82.14 |
| CDY01747 | Canola | mitochondrion | 97.74 | 81.51 |
| Os11t0220800-01 | Rice | nucleus | 81.9 | 80.8 |
| Solyc06g007520.2.1 | Tomato | nucleus, unclear | 83.71 | 80.79 |
| Solyc06g082650.2.1 | Tomato | nucleus | 74.66 | 80.1 |
| GSMUA_Achr6P15860_001 | Banana | mitochondrion | 51.13 | 75.84 |
| VIT_06s0004g08260.t01 | Wine grape | cytosol, mitochondrion | 74.66 | 75.34 |
| HORVU4Hr1G016190.4 | Barley | extracellular, golgi | 68.33 | 75.12 |
| VIT_01s0150g00580.t01 | Wine grape | endoplasmic reticulum | 86.88 | 71.11 |
| KRG98102 | Soybean | mitochondrion, plastid | 84.62 | 71.1 |
| HORVU1Hr1G024710.4 | Barley | mitochondrion | 80.54 | 69.53 |
| GSMUA_Achr6P08650_001 | Banana | endoplasmic reticulum, extracellular | 29.41 | 55.08 |
Protein Annotations
| MapMan:17.1.2.1.9 | Gene3D:2.20.25.330 | Gene3D:3.90.1170.10 | GO:A0A078JA40 | UniProt:A0A078JA40 | EnsemblPlants:CDY62060 |
| ProteinID:CDY62060 | ProteinID:CDY62060.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00035901001 | InterPro:IPR036920 |
| PFAM:PF00252 | PIRSF:PIRSF005590 | ScanProsite:PS01257 | PANTHER:PTHR11726 | PANTHER:PTHR11726:SF17 | InterPro:Ribosomal_L10e |
| InterPro:Ribosomal_L10e/L16 | InterPro:Ribosomal_L10e/L16_sf | InterPro:Ribosomal_L10e_CS | SUPFAM:SSF54686 | TIGRFAMs:TIGR00279 | UniParc:UPI00018C6BE0 |
Description
BnaC06g43320DBnaC06g43320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JA40]
Coordinates
chrLK034090:-:5172..6381
Molecular Weight (calculated)
24873.4 Da
IEP (calculated)
11.222
GRAVY (calculated)
-0.482
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKK KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDNHGAHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTRLRQSKRV VPDGVNAKFL
201: SNHGPLANRQ PGSAFISATS D
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDNHGAHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTRLRQSKRV VPDGVNAKFL
201: SNHGPLANRQ PGSAFISATS D
001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDNHGVHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAE YTKLRAMKRI VPDGVNAKFL
201: SNHGPLANRQ PGSAFISATS E
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDNHGVHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAE YTKLRAMKRI VPDGVNAKFL
201: SNHGPLANRQ PGSAFISATS E
Arabidopsis Description
RPL10C60S ribosomal protein L10-3 [Source:UniProtKB/Swiss-Prot;Acc:Q93W22]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.