Factsheet for Os05t0169100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
cytosol 2
endoplasmic reticulum 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
nucleus: 19621931
plastid: 21433289
nucleus: 26035336
plastid: 27992503

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0685600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26910.1	Os03t0685600-01	AT1G71840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	15.07	94.29
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	92.24	92.24
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	92.24	92.24
TraesCS1A01G112500.1	Wheat	nucleus	92.24	92.24
Zm00001d033128_P001	Maize	plasma membrane, plastid	91.78	91.36
EER93866	Sorghum	cytosol	91.78	91.36
Os11t0220800-01	Rice	nucleus	90.87	88.84
Solyc06g082670.2.1	Tomato	plastid	88.58	88.58
GSMUA_Achr10P...	Banana	cytosol	88.58	86.61
KRH64232	Soybean	nucleus	87.67	86.1
KRH53698	Soybean	cytosol	87.67	86.1
KRH16949	Soybean	nucleus	87.21	86.04
KRH72557	Soybean	nucleus	87.21	86.04
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	86.76	84.44
Solyc06g007520.2.1	Tomato	nucleus, unclear	88.13	84.28
CDY28582	Canola	cytosol, mitochondrion	84.47	83.71
CDY44087	Canola	cytosol, mitochondrion	84.47	83.71
AT1G26910.1	Thale cress	mitochondrion	84.02	83.26
AT1G66580.1	Thale cress	cytosol, mitochondrion	84.02	83.26
CDY38756	Canola	mitochondrion	83.56	83.18
CDY62060	Canola	mitochondrion	83.56	82.81
CDY49095	Canola	mitochondrion	82.65	82.27
AT1G14320.1	Thale cress	mitochondrion	82.65	82.27
CDX84036	Canola	cytosol, mitochondrion	82.65	82.27
CDX96861	Canola	cytosol	82.65	82.27
CDY48394	Canola	cytosol	67.12	79.89
Bra003984.1-P	Field mustard	cytosol	67.12	79.89
GSMUA_Achr6P15860_001	Banana	mitochondrion	54.34	79.87
CDX81630	Canola	cytosol	66.67	79.78
Solyc06g082650.2.1	Tomato	nucleus	74.89	79.61
Bra016706.1-P	Field mustard	cytosol	66.21	79.23
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	75.34	75.34
Bra007877.1-P	Field mustard	mitochondrion	41.1	75.0
CDY39324	Canola	cytosol, mitochondrion	82.65	74.49
Bra016269.1-P	Field mustard	mitochondrion	40.18	73.95
Bra026839.1-P	Field mustard	mitochondrion	39.73	73.11
HORVU1Hr1G024710.4	Barley	mitochondrion	85.39	73.05
KRG98102	Soybean	mitochondrion, plastid	87.67	73.0
CDY33756	Canola	cytosol	82.65	72.69
Bra019662.1-P	Field mustard	mitochondrion	39.27	72.27
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	89.04	72.22
KRH66434	Soybean	cytosol, mitochondrion, plastid	59.82	70.81
KRH65844	Soybean	cytosol	34.7	70.37
Os03t0332500-00	Rice	cytosol	75.8	70.04
KRG88858	Soybean	cytosol	58.9	69.35
CDY01747	Canola	mitochondrion	83.56	69.06
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	33.33	61.86

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	EntrezGene:4337928	EMBL:AK066128	EMBL:AK120033
UniProt:B7EBT7	ProteinID:BAF16673.1	ProteinID:BAS92463.1	ProteinID:EEE62476.1	GO:GO:0000027	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0022625	InterPro:IPR036920	EMBL:KF737327	EnsemblPlantsGene:Os05g0169100	EnsemblPlants:Os05t0169100-01	PFAM:PF00252
PIRSF:PIRSF005590	ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF17	UniProt:Q0DKF0	InterPro:Ribosomal_L10e
InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	TIGRFAMs:TIGR00279	UniParc:UPI0000132EAB
RefSeq:XP_015639565.1	:	:	:	:	:

Description

SG12Similar to 60S ribosomal protein L10 (QM protein homolog). (Os05t0169100-01);Similar to 60S ribosomal protein L10-2. (Os05t0169100-02)

Coordinates

chr5:+:4142124..4144008

Molecular Weight (calculated)

24673.3 Da

IEP (calculated)

11.032

GRAVY (calculated)

-0.525

Length

219 amino acids

Sequence
(BLAST)

001: MGRRPARCYR QIKNKPYPKS RYCRGVPDPK IRIYDVGMKK KGVDEFSHCV HLVSWEKENV TSEALEAARI ACNKYMTKSA GKDAFHLRVR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KPQGTCARVD IGQVLLSVRC KPNNAVHASE ALRRAKFKFP GRQKIIESRK WGFTKFSRDE YVRLKSEGRI MPDGVNAKLL
201: GCHGRLSARA PGKAFLSAA

Best Arabidopsis Sequence Match ( AT1G26910.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPYCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTKLRQEKRI VPDGVNAKFL
201: SCHGPLANRQ PGSAFLSAGA Q

Arabidopsis Description

RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.