Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G114100.1 | Wheat | cytosol, mitochondrion | 100.0 | 100.0 |
| TraesCS1A01G112500.1 | Wheat | nucleus | 100.0 | 100.0 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 15.07 | 94.29 |
| Os05t0169100-01 | Rice | nucleus, plastid | 92.24 | 92.24 |
| EER93866 | Sorghum | cytosol | 91.78 | 91.36 |
| Zm00001d033128_P001 | Maize | plasma membrane, plastid | 90.87 | 90.45 |
| Solyc06g082670.2.1 | Tomato | plastid | 89.95 | 89.95 |
| TraesCS4B01G108400.1 | Wheat | golgi, unclear | 88.58 | 89.4 |
| KRH64232 | Soybean | nucleus | 90.41 | 88.79 |
| KRH53698 | Soybean | cytosol | 90.41 | 88.79 |
| KRH72557 | Soybean | nucleus | 89.95 | 88.74 |
| KRH16949 | Soybean | nucleus | 89.95 | 88.74 |
| GSMUA_Achr10P... | Banana | cytosol | 89.04 | 87.05 |
| Solyc06g007520.2.1 | Tomato | nucleus, unclear | 89.95 | 86.03 |
| AT1G26910.1 | Thale cress | mitochondrion | 85.84 | 85.07 |
| GSMUA_Achr8P01550_001 | Banana | cytosol, mitochondrion | 87.21 | 84.89 |
| CDY44087 | Canola | cytosol, mitochondrion | 85.39 | 84.62 |
| CDY28582 | Canola | cytosol, mitochondrion | 85.39 | 84.62 |
| CDX84036 | Canola | cytosol, mitochondrion | 84.47 | 84.09 |
| AT1G14320.1 | Thale cress | mitochondrion | 84.47 | 84.09 |
| CDY38756 | Canola | mitochondrion | 84.47 | 84.09 |
| CDX96861 | Canola | cytosol | 84.47 | 84.09 |
| AT1G66580.1 | Thale cress | cytosol, mitochondrion | 84.47 | 83.71 |
| CDY62060 | Canola | mitochondrion | 84.47 | 83.71 |
| CDY49095 | Canola | mitochondrion | 84.02 | 83.64 |
| CDX81630 | Canola | cytosol | 68.49 | 81.97 |
| GSMUA_Achr6P15860_001 | Banana | mitochondrion | 55.71 | 81.88 |
| Bra016706.1-P | Field mustard | cytosol | 68.04 | 81.42 |
| Bra003984.1-P | Field mustard | cytosol | 68.04 | 80.98 |
| CDY48394 | Canola | cytosol | 68.04 | 80.98 |
| Solyc06g082650.2.1 | Tomato | nucleus | 75.34 | 80.1 |
| TraesCS4B01G171600.1 | Wheat | cytosol, mitochondrion | 80.82 | 79.02 |
| HORVU1Hr1G024710.4 | Barley | mitochondrion | 91.78 | 78.52 |
| Bra007877.1-P | Field mustard | mitochondrion | 42.01 | 76.67 |
| Bra026839.1-P | Field mustard | mitochondrion | 41.55 | 76.47 |
| CDY39324 | Canola | cytosol, mitochondrion | 84.02 | 75.72 |
| Bra016269.1-P | Field mustard | mitochondrion | 41.1 | 75.63 |
| VIT_06s0004g08260.t01 | Wine grape | cytosol, mitochondrion | 74.89 | 74.89 |
| Bra019662.1-P | Field mustard | mitochondrion | 40.64 | 74.79 |
| CDY33756 | Canola | cytosol | 84.02 | 73.9 |
| KRG98102 | Soybean | mitochondrion, plastid | 88.13 | 73.38 |
| KRG88858 | Soybean | cytosol | 62.1 | 73.12 |
| KRH66434 | Soybean | cytosol, mitochondrion, plastid | 61.64 | 72.97 |
| VIT_01s0150g00580.t01 | Wine grape | endoplasmic reticulum | 89.04 | 72.22 |
| KRH65844 | Soybean | cytosol | 34.7 | 70.37 |
| CDY01747 | Canola | mitochondrion | 84.47 | 69.81 |
| GSMUA_Achr6P08650_001 | Banana | endoplasmic reticulum, extracellular | 32.88 | 61.02 |
Protein Annotations
| MapMan:17.1.2.1.9 | Gene3D:2.20.25.330 | Gene3D:3.90.1170.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR036920 | PFAM:PF00252 | PIRSF:PIRSF005590 | ScanProsite:PS01257 | PANTHER:PTHR11726 | PANTHER:PTHR11726:SF17 |
| InterPro:Ribosomal_L10e | InterPro:Ribosomal_L10e/L16 | InterPro:Ribosomal_L10e/L16_sf | InterPro:Ribosomal_L10e_CS | SUPFAM:SSF54686 | TIGRFAMs:TIGR00279 |
| EnsemblPlantsGene:TraesCS1B01G132700 | EnsemblPlants:TraesCS1B01G132700.1 | TIGR:cd01433 | : | : | : |
Description
No Description!
Coordinates
chr1B:+:167712687..167714362
Molecular Weight (calculated)
24732.4 Da
IEP (calculated)
11.102
GRAVY (calculated)
-0.505
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRRPARCYR QIKNKPYPKS RYCRGVPDPK IRIYDVGMKK KGVDEFSHCV HLVSWEKENV SSEALEAARI ACNKYMTKHA GKDAFHLRVR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KPQGVCARVA IGQVLLSVRC KPNNAIHATE ALRRAKFKFP GRQKIIESRK WGFTKFNRND YLKFKSEGRI LPDGVNAKLL
201: GCHGRLANRA PGQAFLSAA
101: KMLSCAGADR LQTGMRGAFG KPQGVCARVA IGQVLLSVRC KPNNAIHATE ALRRAKFKFP GRQKIIESRK WGFTKFNRND YLKFKSEGRI LPDGVNAKLL
201: GCHGRLANRA PGQAFLSAA
001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPYCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTKLRQEKRI VPDGVNAKFL
201: SCHGPLANRQ PGSAFLSAGA Q
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTKLRQEKRI VPDGVNAKFL
201: SCHGPLANRQ PGSAFLSAGA Q
Arabidopsis Description
RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.