Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G173700.1 | Wheat | cytosol, mitochondrion | 95.54 | 95.54 |
| TraesCS4B01G108400.1 | Wheat | golgi, unclear | 78.57 | 81.11 |
| TraesCS1B01G132700.1 | Wheat | cytosol, mitochondrion | 79.02 | 80.82 |
| Os03t0332500-00 | Rice | cytosol | 81.7 | 77.22 |
| KXG39441 | Sorghum | mitochondrion | 88.39 | 60.92 |
Protein Annotations
| MapMan:17.1.2.1.9 | Gene3D:2.20.25.330 | Gene3D:3.90.1170.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR036920 |
| PFAM:PF00252 | PIRSF:PIRSF005590 | ScanProsite:PS01257 | PANTHER:PTHR11726 | PANTHER:PTHR11726:SF13 | InterPro:Ribosomal_L10e |
| InterPro:Ribosomal_L10e/L16 | InterPro:Ribosomal_L10e/L16_sf | InterPro:Ribosomal_L10e_CS | SUPFAM:SSF54686 | TIGRFAMs:TIGR00279 | EnsemblPlantsGene:TraesCS4B01G171600 |
| EnsemblPlants:TraesCS4B01G171600.1 | TIGR:cd01433 | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:375790684..375791769
Molecular Weight (calculated)
25268.0 Da
IEP (calculated)
11.006
GRAVY (calculated)
-0.527
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRRPARCYR QIKNKPYPKS RYCRGVPDPK IRIFDVGQKK RGVDEFPLCV HLVSWEKENV TSEALEAARI ACNKYMAKHA GKDAFHLHVR AHPYHVLRIN
101: KMLSCAGADR LQTGMRGAFG KPTGMCARVH IGQVLLSVRC RDAHAAHAQE ALRRAKFKFP GRQRVIVSGK WGFTKFKREE YLKLKSEGRI VPDGVNAKLL
201: TWHGSLEGRP RGKGVFPPSV AESA
101: KMLSCAGADR LQTGMRGAFG KPTGMCARVH IGQVLLSVRC RDAHAAHAQE ALRRAKFKFP GRQRVIVSGK WGFTKFKREE YLKLKSEGRI VPDGVNAKLL
201: TWHGSLEGRP RGKGVFPPSV AESA
001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFL
201: SCHGPLANRQ PGSAFLPAHY
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFL
201: SCHGPLANRQ PGSAFLPAHY
Arabidopsis Description
RPL10A60S ribosomal protein L10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VT9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.