CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G171600.1	Wheat	cytosol, mitochondrion	60.92	88.39
TraesCS4D01G173700.1	Wheat	cytosol, mitochondrion	60.92	88.39
EER93866	Sorghum	cytosol	56.31	83.18
EES06560	Sorghum	cytosol	56.0	81.25
Os03t0332500-00	Rice	cytosol	55.08	75.53

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	UniProt:A0A1B6QNF2	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR036920	EnsemblPlants:KXG39441	ProteinID:KXG39441	ProteinID:KXG39441.1	PFAM:PF00252	ScanProsite:PS01257
PANTHER:PTHR11726	PANTHER:PTHR11726:SF13	InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS
EnsemblPlantsGene:SORBI_3001G383000	SUPFAM:SSF54686	TIGRFAMs:TIGR00279	UniParc:UPI00081AB506	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:67060895..67062680

Molecular Weight (calculated)

36393.2 Da

IEP (calculated)

11.828

GRAVY (calculated)

-0.622

Length

325 amino acids

Sequence
(BLAST)

001: MLSPRRPKQS RARRQRHGLR FERTNPSQPK RKLRRLAARR HAFPANQNLP ALGLPAAAGC RSSSPYISTT WPPLLPHAPE SGHKALEPTS QFTTCHVQLS
101: AMGRRPARCY RQIKNKPYPK SRYCRGVPDP KIRIFDVGQK KRGVDEFPLC VHLVSWEKEN VSSEALEAAR IACNKYMAKH AGKDAFHLRV RAHPFHVLRI
201: NKMLSCAGAD RLQTGMRGAF GKPTGTCARV AIGQVLLSVR CRDAHAPQAH EALRRAKFKF PGRQRIITSG KWGFTKFSRA EYLRLKSEGR VVPDGSNAKL
301: LTWHGSLANR QHGRAVYPPS VAGSA

Best Arabidopsis Sequence Match ( AT1G14320.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFL
201: SCHGPLANRQ PGSAFLPAHY

Arabidopsis Description

RPL10A60S ribosomal protein L10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VT9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.