CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 2
cytosol 2
endoplasmic reticulum 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG26924

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26910.1	KXG26924	AT1G71840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033128_P001	Maize	plasma membrane, plastid	99.09	99.09
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	15.0	94.29
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	91.36	91.78
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	91.36	91.78
TraesCS1A01G112500.1	Wheat	nucleus	91.36	91.78
Os05t0169100-01	Rice	nucleus, plastid	91.36	91.78
Solyc06g082670.2.1	Tomato	plastid	90.45	90.87
EES06560	Sorghum	cytosol	92.27	90.62
KRH64232	Soybean	nucleus	90.91	89.69
KRH53698	Soybean	cytosol	90.91	89.69
GSMUA_Achr10P...	Banana	cytosol	90.45	88.84
KRH72557	Soybean	nucleus	89.55	88.74
KRH16949	Soybean	nucleus	89.55	88.74
Solyc06g007520.2.1	Tomato	nucleus, unclear	90.45	86.9
CDY38756	Canola	mitochondrion	86.82	86.82
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	88.64	86.67
AT1G26910.1	Thale cress	mitochondrion	86.82	86.43
CDY44087	Canola	cytosol, mitochondrion	86.82	86.43
CDY28582	Canola	cytosol, mitochondrion	86.82	86.43
CDY62060	Canola	mitochondrion	85.91	85.52
AT1G66580.1	Thale cress	cytosol, mitochondrion	85.45	85.07
CDY49095	Canola	mitochondrion	85.0	85.0
AT1G14320.1	Thale cress	mitochondrion	85.0	85.0
CDX84036	Canola	cytosol, mitochondrion	85.0	85.0
CDX96861	Canola	cytosol	85.0	85.0
CDY48394	Canola	cytosol	69.55	83.15
Bra003984.1-P	Field mustard	cytosol	69.55	83.15
CDX81630	Canola	cytosol	69.09	83.06
GSMUA_Achr6P15860_001	Banana	mitochondrion	55.91	82.55
Bra016706.1-P	Field mustard	cytosol	68.64	82.51
Solyc06g082650.2.1	Tomato	nucleus	75.0	80.1
Bra016269.1-P	Field mustard	mitochondrion	42.73	78.99
Bra007877.1-P	Field mustard	mitochondrion	42.73	78.33
CDY39324	Canola	cytosol, mitochondrion	85.0	76.95
Bra026839.1-P	Field mustard	mitochondrion	41.36	76.47
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	75.91	76.26
Bra019662.1-P	Field mustard	mitochondrion	40.91	75.63
CDY33756	Canola	cytosol	84.55	74.7
KRG98102	Soybean	mitochondrion, plastid	88.64	74.14
HORVU1Hr1G024710.4	Barley	mitochondrion	85.45	73.44
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	89.55	72.96
KRH65844	Soybean	cytosol	35.45	72.22
CDY01747	Canola	mitochondrion	86.82	72.08
KRG88858	Soybean	cytosol	60.45	71.51
KRH66434	Soybean	cytosol, mitochondrion, plastid	60.0	71.35
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	33.18	61.86
KXG39441	Sorghum	mitochondrion	83.18	56.31

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	EntrezGene:8062999	UniProt:C5WTC9	EnsemblPlants:EER93866
ProteinID:EER93866	ProteinID:EER93866.1	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	InterPro:IPR036920
PFAM:PF00252	PIRSF:PIRSF005590	ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF17	InterPro:Ribosomal_L10e
InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	EnsemblPlantsGene:SORBI_3001G177800	SUPFAM:SSF54686	unigene:Sbi.14073
TIGRFAMs:TIGR00279	UniParc:UPI00018C6BA3	RefSeq:XP_002466868.1	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:14982369..14986645

Molecular Weight (calculated)

24882.4 Da

IEP (calculated)

10.825

GRAVY (calculated)

-0.582

Length

220 amino acids

Sequence
(BLAST)

001: MGRRPARCYR QIKNKPYPKS RYCRGVPDPK IRIYDVGMKK KGVDEFPYCV HLVSWEKENV SSEALEAARI ACNKYMTKSA GKDAFHLRVR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KPQGTCARVD IGQVLLSVRC KDNNAAHASE ALRRAKFKFP GRQKIIESRK WGFTKFSRAD YLKYKSEGRI VPDGVNAKLL
201: GNHGRLEKRA PGQAFLEAVA

Best Arabidopsis Sequence Match ( AT1G66580.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDNHGVHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAE YTKLRAMKRI VPDGVNAKFL
201: SNHGPLANRQ PGSAFISATS E

Arabidopsis Description

RPL10C60S ribosomal protein L10-3 [Source:UniProtKB/Swiss-Prot;Acc:Q93W22]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.