CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38756	Canola	mitochondrion	83.02	100.0
CDY28582	Canola	cytosol, mitochondrion	81.51	97.74
CDY44087	Canola	cytosol, mitochondrion	81.51	97.74
CDY62060	Canola	mitochondrion	81.51	97.74
CDY48394	Canola	cytosol	67.55	97.28
AT1G66580.1	Thale cress	cytosol, mitochondrion	79.62	95.48
CDX84036	Canola	cytosol, mitochondrion	77.74	93.64
CDX96861	Canola	cytosol	77.74	93.64
CDY49095	Canola	mitochondrion	77.74	93.64
CDX81630	Canola	cytosol	64.53	93.44
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	12.08	91.43
EER93866	Sorghum	cytosol	72.08	86.82
Solyc06g082670.2.1	Tomato	plastid	71.7	86.76
CDY39324	Canola	cytosol, mitochondrion	79.25	86.42
Zm00001d033128_P001	Maize	plasma membrane, plastid	71.7	86.36
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	70.94	85.84
TraesCS4A01G204800.1	Wheat	plastid	70.19	85.71
TraesCS4B01G108400.1	Wheat	golgi, unclear	69.81	85.25
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	69.43	84.79
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	69.81	84.47
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	69.81	84.47
TraesCS1A01G112500.1	Wheat	nucleus	69.81	84.47
CDY33756	Canola	cytosol	78.87	83.94
GSMUA_Achr10P...	Banana	cytosol	70.94	83.93
PGSC0003DMT400006183	Potato	cytosol	57.74	83.61
Os05t0169100-01	Rice	nucleus, plastid	69.06	83.56
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	70.94	83.56
EES06560	Sorghum	cytosol	70.19	83.04
Solyc06g007520.2.1	Tomato	nucleus, unclear	70.94	82.1
Os11t0220800-01	Rice	nucleus	68.68	81.25
Solyc06g082650.2.1	Tomato	nucleus	61.51	79.13
GSMUA_Achr6P15860_001	Banana	mitochondrion	42.26	75.17
HORVU4Hr1G016190.4	Barley	extracellular, golgi	56.98	75.12
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	61.51	74.43
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	74.34	72.96
KRG98102	Soybean	mitochondrion, plastid	71.7	72.24
HORVU1Hr1G024710.4	Barley	mitochondrion	67.55	69.92
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	24.91	55.93

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	GO:A0A078EKQ9	EnsemblPlants:CDY01747	ProteinID:CDY01747
ProteinID:CDY01747.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00112868001	InterPro:IPR036920	PFAM:PF00252
PIRSF:PIRSF005590	ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF17	InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16
InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	TIGRFAMs:TIGR00279	UniParc:UPI0004EEC1FC	:

Description

BnaC06g27870D

Coordinates

chrLK031929:-:4971..6231

Molecular Weight (calculated)

30149.1 Da

IEP (calculated)

11.301

GRAVY (calculated)

-0.525

Length

265 amino acids

Sequence
(BLAST)

001: MYIKSPMGLL DKQLRLLSLG FSRCSSYKDN ISRVFPHHRR TQPNKMGRRP ARCYRQIKGK PYPKSRYCRG VPDPKIRIYD VGMKKKGVDE FPFCVHLVSW
101: EKENVSSEAL EAARIACNKY MVKSAGKDAF HLRIRVHPFH VLRINKMLSC AGADRLQTGM RGAFGKALGT CARVAIGQVL LSVRCKDNHG AHAQEALRRA
201: KFKFPGRQKI IVSRKWGFTK FNRADYTRMR QSKRIVPDGV NAKFLSNHGP LAKRQPGSAF ISATE

Best Arabidopsis Sequence Match ( AT1G66580.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDNHGVHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAE YTKLRAMKRI VPDGVNAKFL
201: SNHGPLANRQ PGSAFISATS E

Arabidopsis Description

RPL10C60S ribosomal protein L10-3 [Source:UniProtKB/Swiss-Prot;Acc:Q93W22]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.