Factsheet for PGSC0003DMT400006183

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400073944

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26910.1	PGSC0003DMT400073944	AT1G71840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	18.03	94.29
CDX81630	Canola	cytosol	85.25	85.25
GSMUA_Achr6P15860_001	Banana	mitochondrion	69.4	85.23
Bra016706.1-P	Field mustard	cytosol	84.7	84.7
CDY48394	Canola	cytosol	83.06	82.61
Bra003984.1-P	Field mustard	cytosol	83.06	82.61
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	96.72	80.82
Bra026839.1-P	Field mustard	mitochondrion	51.91	79.83
Solyc06g007520.2.1	Tomato	nucleus, unclear	99.45	79.48
Bra019662.1-P	Field mustard	mitochondrion	50.82	78.15
Bra007877.1-P	Field mustard	mitochondrion	50.82	77.5
Bra016269.1-P	Field mustard	mitochondrion	50.27	77.31
KRH72557	Soybean	nucleus	91.8	75.68
KRH16949	Soybean	nucleus	91.8	75.68
KRH64232	Soybean	nucleus	91.8	75.34
KRH53698	Soybean	cytosol	91.8	75.34
GSMUA_Achr10P...	Banana	cytosol	90.16	73.66
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	88.52	72.0
AT1G26910.1	Thale cress	mitochondrion	85.79	71.04
AT1G14320.1	Thale cress	mitochondrion	85.25	70.91
CDX96861	Canola	cytosol	84.7	70.45
CDY49095	Canola	mitochondrion	84.15	70.0
CDX84036	Canola	cytosol, mitochondrion	84.15	70.0
AT1G66580.1	Thale cress	cytosol, mitochondrion	84.15	69.68
CDY44087	Canola	cytosol, mitochondrion	84.15	69.68
CDY28582	Canola	cytosol, mitochondrion	84.15	69.68
CDY38756	Canola	mitochondrion	83.61	69.55
CDY62060	Canola	mitochondrion	83.06	68.78
KRG88858	Soybean	cytosol	65.57	64.52
CDY39324	Canola	cytosol, mitochondrion	84.15	63.37
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	40.44	62.71
KRG98102	Soybean	mitochondrion, plastid	89.62	62.36
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	91.8	62.22
CDY33756	Canola	cytosol	84.15	61.85
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	72.13	60.27
KRH66434	Soybean	cytosol, mitochondrion, plastid	58.47	57.84
CDY01747	Canola	mitochondrion	83.61	57.74
KRH65844	Soybean	cytosol	28.42	48.15
PGSC0003DMT400053166	Potato	cytosol	50.82	40.79

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036920
UniProt:M0ZQY7	PFAM:PF00252	EnsemblPlantsGene:PGSC0003DMG400002405	PGSC:PGSC0003DMG400002405	EnsemblPlants:PGSC0003DMT400006183	PIRSF:PIRSF005590
ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF17	InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf
InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	UniParc:UPI000296F05D	:	:	:

Description

60S ribosomal protein L10 [Source:PGSC_GENE;Acc:PGSC0003DMG400002405]

Coordinates

chr6:-:2745864..2747246

Molecular Weight (calculated)

20485.1 Da

IEP (calculated)

11.034

GRAVY (calculated)

-0.374

Length

183 amino acids

Sequence
(BLAST)

001: MKRKGVDEFP FCVHLVSWEK ENVSSEALEA ARIACNKYMT KSAGKDAFHL RVRVHPFHVL RINKMLSCAG ADRLQTGMRG AFGKPQGVCA RVAIGQVLLS
101: VRCKDGNANH AQEALRRAKF KFPGRQKIIV SRKWGFTKFS RTDYLKYKSE NRIVPDGVNA KLLGCHGRLA ARQPGRAFLE AAN

Best Arabidopsis Sequence Match ( AT1G26910.2 )
(BLAST)

001: MKRKGVDEFP YCVHLVSWEK ENVSSEALEA ARIACNKYMV KSAGKDAFHL RIRVHPFHVL RINKMLSCAG ADRLQTGMRG AFGKALGTCA RVAIGQVLLS
101: VRCKDAHGHH AQEALRRAKF KFPGRQKIIV SRKWGFTKFN RADYTKLRQE KRIVPDGVNA KFLSCHGPLA NRQPGSAFLS AGAQ

Arabidopsis Description

RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.