Factsheet for VIT_06s0004g08260.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
cytosol 2
endoplasmic reticulum 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0016g02220.t01
VIT_18s0164g00020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26910.1	VIT_11s0016g02220.t01	AT1G71840.1	21798944
AT1G26910.1	VIT_18s0164g00020.t01	AT1G71840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	15.53	97.14
Solyc06g082650.2.1	Tomato	nucleus	77.17	82.04
Solyc06g082670.2.1	Tomato	plastid	77.63	77.63
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	77.17	77.17
KRH72557	Soybean	nucleus	77.63	76.58
KRH16949	Soybean	nucleus	77.63	76.58
KRH64232	Soybean	nucleus	77.63	76.23
KRH53698	Soybean	cytosol	77.63	76.23
EER93866	Sorghum	cytosol	76.26	75.91
GSMUA_Achr10P...	Banana	cytosol	77.63	75.89
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	77.63	75.56
Zm00001d033128_P001	Maize	plasma membrane, plastid	75.8	75.45
CDX96861	Canola	cytosol	75.8	75.45
Os05t0169100-01	Rice	nucleus, plastid	75.34	75.34
TraesCS4B01G108400.1	Wheat	golgi, unclear	74.43	75.12
TraesCS4A01G204800.1	Wheat	plastid	74.43	75.12
CDY49095	Canola	mitochondrion	75.34	75.0
EES06560	Sorghum	cytosol	76.71	75.0
CDX84036	Canola	cytosol, mitochondrion	75.34	75.0
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	74.89	74.89
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	74.89	74.89
TraesCS1A01G112500.1	Wheat	nucleus	74.89	74.89
CDY28582	Canola	cytosol, mitochondrion	75.34	74.66
CDY44087	Canola	cytosol, mitochondrion	75.34	74.66
CDY62060	Canola	mitochondrion	75.34	74.66
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	73.97	74.65
Os11t0220800-01	Rice	nucleus	76.26	74.55
AT1G14320.1	Thale cress	mitochondrion	74.89	74.55
CDY38756	Canola	mitochondrion	74.43	74.09
KRH65844	Soybean	cytosol	36.53	74.07
AT1G66580.1	Thale cress	cytosol, mitochondrion	74.43	73.76
HORVU4Hr1G016190.4	Barley	extracellular, golgi	67.58	73.63
AT1G26910.1	Thale cress	mitochondrion	73.97	73.3
Solyc06g007520.2.1	Tomato	nucleus, unclear	75.8	72.49
PGSC0003DMT400006183	Potato	cytosol	60.27	72.13
CDX81630	Canola	cytosol	59.36	71.04
Bra016706.1-P	Field mustard	cytosol	59.36	71.04
Bra003984.1-P	Field mustard	cytosol	58.9	70.11
CDY48394	Canola	cytosol	58.9	70.11
CDY39324	Canola	cytosol, mitochondrion	75.34	67.9
CDY33756	Canola	cytosol	75.34	66.27
KRG88858	Soybean	cytosol	54.34	63.98
KRG98102	Soybean	mitochondrion, plastid	76.71	63.88
GSMUA_Achr6P15860_001	Banana	mitochondrion	43.38	63.76
HORVU1Hr1G024710.4	Barley	mitochondrion	74.43	63.67
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	77.63	62.96
KRH66434	Soybean	cytosol, mitochondrion, plastid	52.51	62.16
CDY01747	Canola	mitochondrion	74.43	61.51
Bra026839.1-P	Field mustard	mitochondrion	31.51	57.98
Bra019662.1-P	Field mustard	mitochondrion	31.05	57.14
Bra007877.1-P	Field mustard	mitochondrion	31.05	56.67
Bra016269.1-P	Field mustard	mitochondrion	30.14	55.46
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	22.83	42.37

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:3.90.1170.10	ProteinID:CCB43388	ProteinID:CCB43388.1	UniProt:F6GU72	EMBL:FN594951
GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	InterPro:IPR036920	PFAM:PF00252	ScanProsite:PS01257
PANTHER:PTHR11726	PANTHER:PTHR11726:SF17	InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS
SUPFAM:SSF54686	TIGRFAMs:TIGR00279	UniParc:UPI000210A5F1	ArrayExpress:VIT_06s0004g08260	EnsemblPlantsGene:VIT_06s0004g08260	EnsemblPlants:VIT_06s0004g08260.t01

Description

No Description!

Coordinates

chr6:+:9072769..9076259

Molecular Weight (calculated)

24664.2 Da

IEP (calculated)

10.628

GRAVY (calculated)

-0.388

Length

219 amino acids

Sequence
(BLAST)

001: MGRRPARCYR QIKNKPYPKS RYCRGVPDPK IRIYDVGMKK KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMTKYA GKDAFHLRVR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KPQGTCARVS IGQVLLSVRC KDGNSHHAQE ALRRAKFKFP GRQKIIVSRK CYLYSPFITC TKTQGVSQSS TELITSSGSL
201: RTGFSLMVSM PSFSDAMDL

Best Arabidopsis Sequence Match ( AT1G14320.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFL
201: SCHGPLANRQ PGSAFLPAHY

Arabidopsis Description

RPL10A60S ribosomal protein L10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VT9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.