Factsheet for Solyc06g082650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
cytosol 2
endoplasmic reticulum 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g008860.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26910.1	Solyc07g008860.2.1	AT1G71840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	16.02	94.29
Solyc06g082670.2.1	Tomato	plastid	84.47	79.45
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	83.98	79.0
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	82.04	77.17
KRH72557	Soybean	nucleus	83.01	77.03
KRH16949	Soybean	nucleus	83.01	77.03
KRH64232	Soybean	nucleus	82.52	76.23
KRH53698	Soybean	cytosol	82.52	76.23
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	80.1	75.34
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	80.1	75.34
TraesCS1A01G112500.1	Wheat	nucleus	80.1	75.34
EER93866	Sorghum	cytosol	80.1	75.0
CDX96861	Canola	cytosol	80.1	75.0
Os05t0169100-01	Rice	nucleus, plastid	79.61	74.89
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	81.55	74.67
CDY44087	Canola	cytosol, mitochondrion	80.1	74.66
CDY62060	Canola	mitochondrion	80.1	74.66
CDY28582	Canola	cytosol, mitochondrion	80.1	74.66
AT1G14320.1	Thale cress	mitochondrion	79.61	74.55
Zm00001d033128_P001	Maize	plasma membrane, plastid	79.61	74.55
CDX84036	Canola	cytosol, mitochondrion	79.61	74.55
Solyc06g007520.2.1	Tomato	nucleus, unclear	82.52	74.24
AT1G66580.1	Thale cress	cytosol, mitochondrion	79.61	74.21
EES06560	Sorghum	cytosol	80.58	74.11
GSMUA_Achr10P...	Banana	cytosol	80.58	74.11
CDY49095	Canola	mitochondrion	79.13	74.09
CDY38756	Canola	mitochondrion	79.13	74.09
AT1G26910.1	Thale cress	mitochondrion	79.13	73.76
Os11t0220800-01	Rice	nucleus	80.1	73.66
TraesCS4B01G108400.1	Wheat	golgi, unclear	77.18	73.27
TraesCS4A01G204800.1	Wheat	plastid	77.18	73.27
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	76.7	72.81
KRH65844	Soybean	cytosol	37.86	72.22
CDX81630	Canola	cytosol	63.59	71.58
HORVU4Hr1G016190.4	Barley	extracellular, golgi	69.42	71.14
Bra016706.1-P	Field mustard	cytosol	63.11	71.04
Bra003984.1-P	Field mustard	cytosol	63.11	70.65
CDY48394	Canola	cytosol	63.11	70.65
CDY39324	Canola	cytosol, mitochondrion	79.61	67.49
CDY33756	Canola	cytosol	80.1	66.27
KRG98102	Soybean	mitochondrion, plastid	81.55	63.88
HORVU1Hr1G024710.4	Barley	mitochondrion	79.13	63.67
KRG88858	Soybean	cytosol	57.28	63.44
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	82.52	62.96
KRH66434	Soybean	cytosol, mitochondrion, plastid	56.31	62.7
GSMUA_Achr6P15860_001	Banana	mitochondrion	44.66	61.74
CDY01747	Canola	mitochondrion	79.13	61.51
Bra026839.1-P	Field mustard	mitochondrion	33.5	57.98
Bra007877.1-P	Field mustard	mitochondrion	33.01	56.67
Bra019662.1-P	Field mustard	mitochondrion	32.04	55.46
Bra016269.1-P	Field mustard	mitochondrion	32.04	55.46
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	23.79	41.53

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:3.90.1170.10	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	InterPro:IPR036920
UniProt:K4CAC0	PFAM:PF00252	PIRSF:PIRSF005590	ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF17
InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	EnsemblPlantsGene:Solyc06g082650.2
EnsemblPlants:Solyc06g082650.2.1	TIGRFAMs:TIGR00279	UniParc:UPI00027659C9	:	:	:

Description

No Description!

Coordinates

chr6:+:48408091..48410577

Molecular Weight (calculated)

23357.0 Da

IEP (calculated)

10.748

GRAVY (calculated)

-0.214

Length

206 amino acids

Sequence
(BLAST)

001: MGRRPARCYR QIKNKPYPKS RFCRGVPDPK IRIYDVGMKK KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMTKSA GKDAFHLRVR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KPQGVCARVA IGQVLLSVRC KDGNSNHAQE ALRRAKFKFP GRQKIIVSRK CFLATMVDLL HVNLEGPSLH LLSIQLNNFE
201: IIMFCI

Best Arabidopsis Sequence Match ( AT1G66580.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDNHGVHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAE YTKLRAMKRI VPDGVNAKFL
201: SNHGPLANRQ PGSAFISATS E

Arabidopsis Description

RPL10C60S ribosomal protein L10-3 [Source:UniProtKB/Swiss-Prot;Acc:Q93W22]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.