Factsheet for GSMUA_Achr6P08650_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26910.1	GSMUA_Achr11P...	AT1G71840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026839.1-P	Field mustard	mitochondrion	54.24	53.78
GSMUA_Achr6P15860_001	Banana	mitochondrion	66.95	53.02
Bra016269.1-P	Field mustard	mitochondrion	53.39	52.94
Bra019662.1-P	Field mustard	mitochondrion	53.39	52.94
Bra007877.1-P	Field mustard	mitochondrion	53.39	52.5
PGSC0003DMT400006183	Potato	cytosol	62.71	40.44
GSMUA_Achr10P...	Banana	cytosol	67.8	35.71
CDX81630	Canola	cytosol	55.08	35.52
Bra016706.1-P	Field mustard	cytosol	54.24	34.97
KRH53698	Soybean	cytosol	65.25	34.53
KRH64232	Soybean	nucleus	65.25	34.53
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	63.56	34.25
Bra003984.1-P	Field mustard	cytosol	53.39	34.24
CDY48394	Canola	cytosol	53.39	34.24
KRH72557	Soybean	nucleus	64.41	34.23
KRH16949	Soybean	nucleus	64.41	34.23
Solyc06g082670.2.1	Tomato	plastid	62.71	33.79
Os05t0169100-01	Rice	nucleus, plastid	61.86	33.33
EER93866	Sorghum	cytosol	61.86	33.18
Zm00001d033128_P001	Maize	plasma membrane, plastid	61.86	33.18
EES06560	Sorghum	cytosol	62.71	33.04
TraesCS1A01G112500.1	Wheat	nucleus	61.02	32.88
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	61.02	32.88
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	61.02	32.88
TraesCS4A01G204800.1	Wheat	plastid	60.17	32.72
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	61.86	32.44
Solyc06g007520.2.1	Tomato	nucleus, unclear	62.71	32.31
TraesCS4B01G108400.1	Wheat	golgi, unclear	59.32	32.26
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	58.47	31.8
AT1G26910.1	Thale cress	mitochondrion	59.32	31.67
Os11t0220800-01	Rice	nucleus	58.47	30.8
AT1G66580.1	Thale cress	cytosol, mitochondrion	57.63	30.77
AT1G14320.1	Thale cress	mitochondrion	56.78	30.45
CDX84036	Canola	cytosol, mitochondrion	55.93	30.0
CDX96861	Canola	cytosol	55.93	30.0
CDY38756	Canola	mitochondrion	55.93	30.0
CDY49095	Canola	mitochondrion	55.93	30.0
CDY28582	Canola	cytosol, mitochondrion	55.93	29.86
CDY44087	Canola	cytosol, mitochondrion	55.93	29.86
KRG88858	Soybean	cytosol	46.61	29.57
CDY62060	Canola	mitochondrion	55.08	29.41
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	66.1	28.89
KRG98102	Soybean	mitochondrion, plastid	63.56	28.52
CDY39324	Canola	cytosol, mitochondrion	55.93	27.16
CDY33756	Canola	cytosol	56.78	26.91
KRH66434	Soybean	cytosol, mitochondrion, plastid	39.83	25.41
HORVU1Hr1G024710.4	Barley	mitochondrion	55.08	25.39
CDY01747	Canola	mitochondrion	55.93	24.91
HORVU4Hr1G016190.4	Barley	extracellular, golgi	41.53	24.38
Solyc06g082650.2.1	Tomato	nucleus	41.53	23.79
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	42.37	22.83
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	2.54	8.57
KRH65844	Soybean	cytosol	5.08	5.56

Protein Annotations

Gene3D:2.20.25.330	Gene3D:3.90.1170.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G08650_001
EnsemblPlants:GSMUA_Achr6P08650_001	EnsemblPlants:GSMUA_Achr6T08650_001	InterPro:IPR036920	UniProt:M0T5B4	PFAM:PF00252	PANTHER:PTHR11726
PANTHER:PTHR11726:SF22	InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	SUPFAM:SSF54686	SignalP:SignalP-noTM
UniParc:UPI0002966574	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G08650_001]

Coordinates

chr6:-:5741269..5744406

Molecular Weight (calculated)

13261.6 Da

IEP (calculated)

11.058

GRAVY (calculated)

0.176

Length

118 amino acids

Sequence
(BLAST)

001: MARLPPWVLF LLGSLVALFR VHLGSLRGCV RVSIGQVLLS VRCKDSNINH AQEALCHAKF KFPGRQKIII SGKWGFTKFS RAEYAKWKSE NRIIPDGVNA
101: KLLGCHAHLL IVNLERLS

Best Arabidopsis Sequence Match ( AT1G26910.2 )
(BLAST)

001: MKRKGVDEFP YCVHLVSWEK ENVSSEALEA ARIACNKYMV KSAGKDAFHL RIRVHPFHVL RINKMLSCAG ADRLQTGMRG AFGKALGTCA RVAIGQVLLS
101: VRCKDAHGHH AQEALRRAKF KFPGRQKIIV SRKWGFTKFN RADYTKLRQE KRIVPDGVNA KFLSCHGPLA NRQPGSAFLS AGAQ

Arabidopsis Description

RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.