CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016706.1-P	Field mustard	cytosol	83.18	100.0
CDX84036	Canola	cytosol, mitochondrion	99.55	99.55
CDY49095	Canola	mitochondrion	99.09	99.09
CDX81630	Canola	cytosol	82.27	98.91
AT1G14320.1	Thale cress	mitochondrion	97.73	97.73
CDY62060	Canola	mitochondrion	95.0	94.57
CDY28582	Canola	cytosol, mitochondrion	94.09	93.67
CDY44087	Canola	cytosol, mitochondrion	94.09	93.67
CDY38756	Canola	mitochondrion	93.64	93.64
CDY48394	Canola	cytosol	78.18	93.48
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	14.55	91.43
CDY39324	Canola	cytosol, mitochondrion	97.73	88.48
CDY33756	Canola	cytosol	98.18	86.75
Solyc06g082670.2.1	Tomato	plastid	85.45	85.84
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	85.45	85.84
TraesCS4A01G204800.1	Wheat	plastid	84.09	85.25
EER93866	Sorghum	cytosol	85.0	85.0
TraesCS4B01G108400.1	Wheat	golgi, unclear	83.64	84.79
PGSC0003DMT400006183	Potato	cytosol	70.45	84.7
Zm00001d033128_P001	Maize	plasma membrane, plastid	84.55	84.55
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	84.09	84.47
TraesCS1A01G112500.1	Wheat	nucleus	84.09	84.47
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	84.09	84.47
GSMUA_Achr10P...	Banana	cytosol	85.91	84.38
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	83.18	84.33
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	85.91	84.0
Os05t0169100-01	Rice	nucleus, plastid	82.27	82.65
EES06560	Sorghum	cytosol	84.09	82.59
Solyc06g007520.2.1	Tomato	nucleus, unclear	85.45	82.1
Os11t0220800-01	Rice	nucleus	82.73	81.25
Solyc06g082650.2.1	Tomato	nucleus	75.0	80.1
CDY01747	Canola	mitochondrion	93.64	77.74
GSMUA_Achr6P15860_001	Banana	mitochondrion	52.27	77.18
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	75.45	75.8
HORVU4Hr1G016190.4	Barley	extracellular, golgi	68.64	75.12
KRG98102	Soybean	mitochondrion, plastid	86.82	72.62
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	88.18	71.85
HORVU1Hr1G024710.4	Barley	mitochondrion	80.45	69.14
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	30.0	55.93

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	GO:A0A078E6L3	EnsemblPlants:CDX96861	ProteinID:CDX96861
ProteinID:CDX96861.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00103102001	InterPro:IPR036920	PFAM:PF00252
PIRSF:PIRSF005590	ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF22	InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16
InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	TIGRFAMs:TIGR00279	UniParc:UPI0004EECE75	:

Description

BnaA08g24040D

Coordinates

chrLK031895:-:1273266..1274462

Molecular Weight (calculated)

24888.6 Da

IEP (calculated)

11.102

GRAVY (calculated)

-0.454

Length

220 amino acids

Sequence
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKK KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDGHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFF
201: SCHGPLANRQ PGTAFLPATY

Best Arabidopsis Sequence Match ( AT1G14320.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFL
201: SCHGPLANRQ PGSAFLPAHY

Arabidopsis Description

RPL10A60S ribosomal protein L10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VT9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.