Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 3
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G022250.4 | |
| HORVU3Hr1G013230.4 | |
| HORVU5Hr1G075920.16 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G26910.1 | HORVU2Hr1G022250.4 | AT1G71840.1 | 21798944 |
| AT1G26910.1 | HORVU3Hr1G013230.4 | AT1G71840.1 | 21798944 |
| AT1G26910.1 | HORVU5Hr1G075920.16 | AT1G71840.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 15.92 | 91.43 |
| TraesCS4B01G108400.1 | Wheat | golgi, unclear | 83.08 | 76.96 |
| TraesCS4D01G105600.1 | Wheat | cytosol, mitochondrion | 82.59 | 76.5 |
| TraesCS4A01G204800.1 | Wheat | plastid | 82.59 | 76.5 |
| EES06560 | Sorghum | cytosol | 79.1 | 70.98 |
| Solyc06g082670.2.1 | Tomato | plastid | 76.62 | 70.32 |
| Os11t0220800-01 | Rice | nucleus | 78.11 | 70.09 |
| KRH53698 | Soybean | cytosol | 77.11 | 69.51 |
| KRH64232 | Soybean | nucleus | 77.11 | 69.51 |
| Solyc06g082650.2.1 | Tomato | nucleus | 71.14 | 69.42 |
| KRH16949 | Soybean | nucleus | 76.62 | 69.37 |
| KRH72557 | Soybean | nucleus | 76.62 | 69.37 |
| Solyc06g007520.2.1 | Tomato | nucleus, unclear | 78.61 | 69.0 |
| GSMUA_Achr10P... | Banana | cytosol | 76.62 | 68.75 |
| CDX84036 | Canola | cytosol, mitochondrion | 75.12 | 68.64 |
| CDY49095 | Canola | mitochondrion | 75.12 | 68.64 |
| CDY38756 | Canola | mitochondrion | 75.12 | 68.64 |
| CDX96861 | Canola | cytosol | 75.12 | 68.64 |
| GSMUA_Achr8P01550_001 | Banana | cytosol, mitochondrion | 76.62 | 68.44 |
| CDY28582 | Canola | cytosol, mitochondrion | 75.12 | 68.33 |
| CDY62060 | Canola | mitochondrion | 75.12 | 68.33 |
| CDY44087 | Canola | cytosol, mitochondrion | 75.12 | 68.33 |
| AT1G26910.1 | Thale cress | mitochondrion | 75.12 | 68.33 |
| AT1G14320.1 | Thale cress | mitochondrion | 74.63 | 68.18 |
| AT1G66580.1 | Thale cress | cytosol, mitochondrion | 74.63 | 67.87 |
| VIT_06s0004g08260.t01 | Wine grape | cytosol, mitochondrion | 73.63 | 67.58 |
| KRH65844 | Soybean | cytosol | 35.82 | 66.67 |
| Bra016706.1-P | Field mustard | cytosol | 58.71 | 64.48 |
| CDX81630 | Canola | cytosol | 58.71 | 64.48 |
| Bra003984.1-P | Field mustard | cytosol | 58.71 | 64.13 |
| CDY48394 | Canola | cytosol | 58.71 | 64.13 |
| CDY39324 | Canola | cytosol, mitochondrion | 75.12 | 62.14 |
| HORVU1Hr1G024710.4 | Barley | mitochondrion | 77.61 | 60.94 |
| CDY33756 | Canola | cytosol | 74.13 | 59.84 |
| GSMUA_Achr6P15860_001 | Banana | mitochondrion | 44.28 | 59.73 |
| KRG88858 | Soybean | cytosol | 54.73 | 59.14 |
| VIT_01s0150g00580.t01 | Wine grape | endoplasmic reticulum | 78.61 | 58.52 |
| KRG98102 | Soybean | mitochondrion, plastid | 75.62 | 57.79 |
| CDY01747 | Canola | mitochondrion | 75.12 | 56.98 |
| KRH66434 | Soybean | cytosol, mitochondrion, plastid | 51.24 | 55.68 |
| Bra026839.1-P | Field mustard | mitochondrion | 31.84 | 53.78 |
| Bra019662.1-P | Field mustard | mitochondrion | 31.84 | 53.78 |
| Bra016269.1-P | Field mustard | mitochondrion | 31.84 | 53.78 |
| Bra007877.1-P | Field mustard | mitochondrion | 31.84 | 53.33 |
| GSMUA_Achr6P08650_001 | Banana | endoplasmic reticulum, extracellular | 24.38 | 41.53 |
| PGSC0003DMT400053166 | Potato | cytosol | 25.37 | 22.37 |
Protein Annotations
| MapMan:17.1.2.1.9 | Gene3D:3.90.1170.10 | UniProt:A0A287NCW7 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:HORVU4Hr1G016190 |
| EnsemblPlants:HORVU4Hr1G016190.4 | InterPro:IPR036920 | PFAM:PF00252 | PIRSF:PIRSF005590 | PANTHER:PTHR11726 | PANTHER:PTHR11726:SF17 |
| InterPro:Ribosomal_L10e | InterPro:Ribosomal_L10e/L16 | InterPro:Ribosomal_L10e/L16_sf | SUPFAM:SSF54686 | SignalP:SignalP-noTM | UniParc:UPI000B4749B1 |
Description
No Description!
Coordinates
chrchr4H:-:65315302..65320440
Molecular Weight (calculated)
22880.2 Da
IEP (calculated)
10.830
GRAVY (calculated)
-0.428
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MSICIWFLIF GALLLWSGPA RCYRQIKNKP YPKSRYCRGV PDPKIRIYDV GMKKKGVDKF PSLVCWEKEN VSSEALEAAR IACNKYMTKN AGKDAFHLRV
101: RVHPYHVLRI NKMLSCAGAD RLQTGTRGAF GKPLGTCARV DIGQVLLSVR SKEINGIHAD EALRHAKFKF PGRRKTIPSR GFTKFNKADY IKYKSRGKDR
201: V
101: RVHPYHVLRI NKMLSCAGAD RLQTGTRGAF GKPLGTCARV DIGQVLLSVR SKEINGIHAD EALRHAKFKF PGRRKTIPSR GFTKFNKADY IKYKSRGKDR
201: V
001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFL
201: SCHGPLANRQ PGSAFLPAHY
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFL
201: SCHGPLANRQ PGSAFLPAHY
Arabidopsis Description
RPL10A60S ribosomal protein L10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VT9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.