CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
endoplasmic reticulum 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53698	Soybean	cytosol	100.0	100.0
KRH72557	Soybean	nucleus	95.52	95.95
KRH16949	Soybean	nucleus	95.52	95.95
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	91.93	93.61
Solyc06g082670.2.1	Tomato	plastid	91.93	93.61
PGSC0003DMT400006183	Potato	cytosol	75.34	91.8
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	14.35	91.43
GSMUA_Achr10P...	Banana	cytosol	91.48	91.07
EER93866	Sorghum	cytosol	89.69	90.91
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	88.79	90.41
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	88.79	90.41
TraesCS1A01G112500.1	Wheat	nucleus	88.79	90.41
TraesCS4A01G204800.1	Wheat	plastid	87.89	90.32
Zm00001d033128_P001	Maize	plasma membrane, plastid	88.79	90.0
TraesCS4B01G108400.1	Wheat	golgi, unclear	87.44	89.86
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	87.0	89.4
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	90.13	89.33
Solyc06g007520.2.1	Tomato	nucleus, unclear	91.03	88.65
EES06560	Sorghum	cytosol	88.79	88.39
Os05t0169100-01	Rice	nucleus, plastid	86.1	87.67
GSMUA_Achr6P15860_001	Banana	mitochondrion	57.85	86.58
Os11t0220800-01	Rice	nucleus	85.65	85.27
Solyc06g082650.2.1	Tomato	nucleus	76.23	82.52
KRH66434	Soybean	cytosol, mitochondrion, plastid	65.92	79.46
KRG98102	Soybean	mitochondrion, plastid	91.93	77.95
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	76.23	77.63
HORVU4Hr1G016190.4	Barley	extracellular, golgi	69.51	77.11
KRG88858	Soybean	cytosol	64.13	76.88
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	91.93	75.93
KRH65844	Soybean	cytosol	35.87	74.07
HORVU1Hr1G024710.4	Barley	mitochondrion	82.51	71.88
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	34.53	65.25

Protein Annotations

EntrezGene:100815571	MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	UniProt:A0A0R0JKN5	EMBL:ACUP02002750
EMBL:ACUP02003480	EnsemblPlantsGene:GLYMA_04G224000	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036920	ProteinID:KRH53698.1
EnsemblPlants:KRH64232	ProteinID:KRH64232	ProteinID:KRH64232.1	PFAM:PF00252	PIRSF:PIRSF005590	ScanProsite:PS01257
PANTHER:PTHR11726	PANTHER:PTHR11726:SF22	InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS
SUPFAM:SSF54686	TIGRFAMs:TIGR00279	UniParc:UPI00018C6BA0	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:49450286..49453082

Molecular Weight (calculated)

25066.7 Da

IEP (calculated)

11.036

GRAVY (calculated)

-0.454

Length

223 amino acids

Sequence
(BLAST)

001: MGRRPARCYR QIKNKPYPKS RFCRGVPDPK IRIYDVGMKK KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMAKFA GKDAFHLRVR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KPQGTCARVA IGQVLLSVRC KDSNSHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFSRAD YLKYKSESRI VPDGVNAKLL
201: GCHGPLANRQ PGQAFLSSAT ATA

Best Arabidopsis Sequence Match ( AT1G26910.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPYCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTKLRQEKRI VPDGVNAKFL
201: SCHGPLANRQ PGSAFLSAGA Q

Arabidopsis Description

RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.